miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 131 bits (66), Expect = 1e-30
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 17 ggtaacgggttgtacagtcatctccaatgttgtacttctgaactatacaacctactacct 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ggtaacgggttgtacagtcatctccaatgttgtacttctgaactatacaacctactacct 9
Query: 77 cacctc 82
||||||
Sbjct: 8 cacctc 3
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 85.7 bits (43), Expect = 8e-17
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 24 ggttgtacagtcatctccaatgttgtacttctgaactatacaacctactacctcacctc 82
||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 61 ggttgcacagttatctccaatgatgtacttctcaactatacaacctactacctcacctc 3
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 61.9 bits (31), Expect = 1e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 24 ggttgtacagtcatctccaatgttgtacttctgaactatacaacctactacctca 78
||||||||||| ||||||| || ||| |||| ||||||||||||||||||||||
Sbjct: 61 ggttgtacagttatctccagtgatgttattctaaactatacaacctactacctca 7
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 24 ggttgtacagtcatctccaatgttgtacttctgaactatacaacctactacctcacc 80
|||||||||| |||||| ||| |||| ||| ||||||||||||||||||||||||
Sbjct: 61 ggttgtacagctatctcccatggtgtatctctaaactatacaacctactacctcacc 5
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 56.0 bits (28), Expect = 7e-08
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 27 tgtacagtcatctccaatgttgtacttctgaactatacaacctactacctca 78
|||||||| |||||| || |||| |||| ||||||||||||||||||||||
Sbjct: 58 tgtacagttatctcccttgatgtaattctaaactatacaacctactacctca 7
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 56.0 bits (28), Expect = 7e-08
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 27 tgtacagtcatctccaatgttgtacttctgaactatacaacctactacctca 78
|||||||| |||||| ||||||| ||| ||||||||||||||||||||||
Sbjct: 58 tgtacagttatctcccgtgttgtaactctaaactatacaacctactacctca 7
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacctc 82
||||||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctcacctc 3
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacctc 82
||||||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctcacctc 3
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 53 tctgaactatacaacctactacctca 78
||||||||||||||||||||||||||
Sbjct: 32 tctgaactatacaacctactacctca 7
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacctc 82
||||||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctcacctc 3
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 53 tctgaactatacaacctactacctca 78
||||||||||||||||||||||||||
Sbjct: 32 tctgaactatacaacctactacctca 7
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 47 tgtacttctgaactatacaacctactacctcacc 80
|||| |||| ||||||||||||||||||||||||
Sbjct: 38 tgtaattctaaactatacaacctactacctcacc 5
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 52 ttctgaactatacaacctactacctcacc 80
|||| ||||||||||||||||||||||||
Sbjct: 32 ttctaaactatacaacctactacctcacc 4
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 52 ttctgaactatacaacctactacctcacc 80
|||| ||||||||||||||||||||||||
Sbjct: 32 ttctaaactatacaacctactacctcacc 4
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacct 81
|||||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctcacct 4
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacct 81
|||||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctcacct 4
>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacct 81
|||||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctcacct 4
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacct 81
|||||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctcacct 4
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacc 80
||||||||||||||||||||||||
Sbjct: 27 aactatacaacctactacctcacc 4
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacc 80
||||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctcacc 5
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacc 80
||||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctcacc 5
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacc 80
||||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctcacc 5
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 47 tgtacttctgaactatacaacctactacctca 78
|||| |||| ||||||||||||||||||||||
Sbjct: 38 tgtaattctcaactatacaacctactacctca 7
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacc 80
||||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctcacc 5
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacc 80
||||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctcacc 5
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacc 80
||||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctcacc 5
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctcacc 80
||||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctcacc 5
>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 56 gaactatacaacctactacctca 78
|||||||||||||||||||||||
Sbjct: 29 gaactatacaacctactacctca 7
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 52 ttctgaactatacaacctactacctca 78
|||| ||||||||||||||||||||||
Sbjct: 32 ttctaaactatacaacctactacctca 6
>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 56 gaactatacaacctactacctca 78
|||||||||||||||||||||||
Sbjct: 28 gaactatacaacctactacctca 6
>RF00027;let-7;BAAF04093499.1/4339-4264 8090:Oryzias latipes
(Japanese medaka)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 24 ggttgtacagtcatctccaatgttgtacttctgaactatacaacctactacctca 78
||||||||||| | |||| | | |||| |||| ||| ||||||||||||||||||
Sbjct: 61 ggttgtacagttaactcccagggtgtaattctaaaccatacaacctactacctca 7
>RF00027;let-7;BAAE01198743.1/2195-2119 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 24 ggttgtacagtcatctccaatgttgtacttctgaactatacaacctactacctca 78
|||||||||||||||||| | ||| |||| |||||||||||| |||||||||
Sbjct: 61 ggttgtacagtcatctcccggggtgtcattctcaactatacaacccactacctca 7
>RF00027;let-7;BABH01009736.1/23777-23700 7091:Bombyx mori
(domestic silkworm)
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 44 tgttgtacttctgaactatacaacctactacctca 78
||||||| ||| | |||||||||||||||||||||
Sbjct: 41 tgttgtatttccgtactatacaacctactacctca 7
>RF00027;let-7;AAZX01015868.1/1070-988 7425:Nasonia vitripennis
(jewel wasp)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 58 actatacaacctactacctcacc 80
|||||||||||||||||||||||
Sbjct: 27 actatacaacctactacctcacc 5
>RF00027;let-7;AADG05003176.1/75207-75290 7460:Apis mellifera
(honey bee)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 58 actatacaacctactacctcacc 80
|||||||||||||||||||||||
Sbjct: 27 actatacaacctactacctcacc 5
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctca 78
||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctca 7
>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctca 78
||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctca 7
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctca 78
||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctca 7
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctca 78
||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctca 7
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctca 78
||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctca 7
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 57 aactatacaacctactacctca 78
||||||||||||||||||||||
Sbjct: 28 aactatacaacctactacctca 7
