miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 149 bits (75), Expect = 6e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgtgaggtacccaagtcacaaattcgtttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgtgaggtacccaagtcacaaattcgtttctg 60
Query: 61 caggtataatgtagc 75
|||||||||||||||
Sbjct: 61 caggtataatgtagc 75
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgt 31
|||||||||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 75
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 tatgtaccctgtagatccgaatttgtgtgag 34
|||||||||||||||||||||||||||||||
Sbjct: 4 tatgtaccctgtagatccgaatttgtgtgag 34
>RF00104;mir-10;CAAB01001327.1/34126-34200 31033:Takifugu rubripes
Length = 75
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgtgag 34
|||||||||||||||||| |||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtgag 34
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgtga 33
|||||| ||||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagatccgaatttgtgtga 33
>RF00104;mir-10;AC145806.2/102674-102746 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 73
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgtg 32
|||||||||||||||||| |||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;AB232922.1/86430-86356 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 56.0 bits (28), Expect = 6e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgtg 32
|||||||||||||||||| |||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;BX005254.9/84183-84108 7955:Danio rerio
(zebrafish)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgt 31
|||||||||||||||||| ||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;EU025715.1/118732-118806 8030:Salmo salar
(Atlantic salmon)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgt 31
|||||||||||||||||| ||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgt 31
|||||| ||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagatccgaatttgtgt 31
>RF00104;mir-10;FJ497007.1/255336-255410 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgtgag 34
|||||| ||||||||||| |||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtgag 34
>RF00104;mir-10;AAWZ01028329.1/91871-91943 28377:Anolis
carolinensis (green anole)
Length = 73
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 2 tatatgtaccctgtagatccgaatttgtgtgag 34
||||||||||||||||| ||||||||||||||
Sbjct: 2 tatatgtaccctgtagaatcgaatttgtgtgag 34
>RF00104;mir-10;DQ481668.1/168869-168943 31033:Takifugu rubripes
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgtga 33
|||||| ||||||||||| ||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtga 33
>RF00104;mir-10;AY303234.1/14458-14526 39110:Sphoeroides nephelus
Length = 69
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgtgtga 33
|||||||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgtgtga 33
>RF00104;mir-10;AB232920.1/58331-58253 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgtga 33
|||||| ||||||||||||||| ||||||||||
Sbjct: 1 ctatatctaccctgtagatccggatttgtgtga 33
>RF00104;mir-10;BAAE01096977.1/80-154 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgtga 33
|||||| ||||||||||| ||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtga 33
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgtgt 31
||||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgtgt 31
>RF00104;mir-10;ABRQ01011010.1/8721-8795 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgtg 32
|||||| ||||||||||| |||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;AC165428.1/216964-216881 7668:Strongylocentrotus
purpuratus
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgtgt 31
|||||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgtgt 31
>RF00104;mir-10;FJ356145.1/1191-1265 8022:Oncorhynchus mykiss
(rainbow trout)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgt 31
||||||| |||||||||| ||||||||||||
Sbjct: 1 ctatatgcaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;CAAB01000183.1/83579-83654 31033:Takifugu rubripes
Length = 76
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgtgt 31
|||||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgtgt 31
>RF00104;mir-10;EF594314.1/41875-41950 8153:Haplochromis burtoni
Length = 76
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgtgt 31
|||||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgtgt 31
>RF00104;mir-10;AANH01009874.1/6075-5997 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgt 31
|||||| ||||||||||||||| ||||||||
Sbjct: 1 ctatatctaccctgtagatccggatttgtgt 31
>RF00104;mir-10;AAVX01239926.1/451-377 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgt 31
|||||| ||||||||||| ||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AAQB01008633.1/164536-164458 7260:Drosophila
willistoni
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AAPT01019387.1/166139-166214 7222:Drosophila
grimshawi
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AAPU01011054.1/176581-176658 7230:Drosophila
mojavensis
Length = 78
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AAJJ01000198.1/34838-34768 7070:Tribolium
castaneum (red flour beetle)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;ABJB011126277.1/3833-3903 6945:Ixodes scapularis
(black-legged tick)
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;ABPM01028404.1/870-945 106582:Maylandia zebra
(zebra mbuna)
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1 ctatatgtaccctgtagatccgaatttgtgtga 33
|||||| ||||||||||| ||||||| ||||||
Sbjct: 1 ctatatataccctgtagaaccgaattggtgtga 33
>RF00104;mir-10;ABKQ02021837.1/5843-5769 377270:Anopheles gambiae
S
Length = 75
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgt 29
|||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgt 29
