miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;ABEP02037830.1/78220-78140 7739:Branchiostoma
floridae (Florida lancelet)
Length = 81
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 6 gagggcgaggaaatggcaagatgttggcatagctgtttggagttctgggtcggctgtgct 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagggcgaggaaatggcaagatgttggcatagctgtttggagttctgggtcggctgtgct 60
Query: 66 gacaaactgccatttcccgtt 86
|||||||||||||||||||||
Sbjct: 61 gacaaactgccatttcccgtt 81
>RF00661;mir-31;CAAK05021429.1/259-339 7955:Danio rerio
(zebrafish)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 atggcaagatgttggcatagctgtt 42
|||||||||||||||||||||||||
Sbjct: 13 atggcaagatgttggcatagctgtt 37
>RF00661;mir-31;AAGJ02119479.1/16120-16038 7668:Strongylocentrotus
purpuratus
Length = 83
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaaatggcaagatgttggcatagctgt 41
|||| ||||||||||||||||||||||
Sbjct: 10 gaaaaggcaagatgttggcatagctgt 36
>RF00661;mir-31;AAPN01033181.1/1752-1830 9258:Ornithorhynchus
anatinus (platypus)
Length = 79
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ggcaagatgttggcatagctgtt 42
|||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgtt 37
>RF00661;mir-31;AC189661.2/146363-146285 9031:Gallus gallus
(chicken)
Length = 79
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ggcaagatgttggcatagctgtt 42
|||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgtt 37
>RF00661;mir-31;AANH01007167.1/95060-94981 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ggcaagatgttggcatagctgtt 42
|||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctgtt 37
>RF00661;mir-31;BAAE01170693.1/1745-1803 8090:Oryzias latipes
(Japanese medaka)
Length = 59
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ggcaagatgttggcatagctgtt 42
|||||||||||||||||||||||
Sbjct: 1 ggcaagatgttggcatagctgtt 23
>RF00661;mir-31;ABEG01018473.1/17089-17170 135651:Caenorhabditis
brenneri
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 tggcaagatgttggcatagctg 40
||||||||||||||||||||||
Sbjct: 14 tggcaagatgttggcatagctg 35
>RF00661;mir-31;AACT01023302.1/10702-10781 51511:Ciona savignyi
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 atggcaagatgttggcatagct 39
||||||||||||||||||||||
Sbjct: 13 atggcaagatgttggcatagct 34
>RF00661;mir-31;AABS01000260.1/39485-39404 7719:Ciona intestinalis
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 atggcaagatgttggcatagct 39
||||||||||||||||||||||
Sbjct: 13 atggcaagatgttggcatagct 34
