miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;ABEP02031049.1/2682-2605 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 78

 Score =  155 bits (78), Expect = 1e-37
 Identities = 78/78 (100%)
 Strand = Plus / Plus

                                                                      
Query: 13 cctgtcagacaggtcaggattggtggcaatgcttataaacgtgtcagtattgcacttgtc 72
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cctgtcagacaggtcaggattggtggcaatgcttataaacgtgtcagtattgcacttgtc 60

                            
Query: 73 ccggcctttctgattggt 90
          ||||||||||||||||||
Sbjct: 61 ccggcctttctgattggt 78




>RF00464;mir-92;AAWZ01041388.1/1227-1308 28377:Anolis carolinensis
          (green anole)
          Length = 82

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 57 cagtattgcacttgtcccggcct 79
          |||||||||||||||||||||||
Sbjct: 49 cagtattgcacttgtcccggcct 71




>RF00464;mir-92;ABQO010442129.1/1114-1031 9315:Macropus eugenii
          (tammar wallaby)
          Length = 84

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 58 agtattgcacttgtcccggcct 79
          ||||||||||||||||||||||
Sbjct: 52 agtattgcacttgtcccggcct 73




>RF00464;mir-92;AAFR03056382.1/2360-2443 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 84

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 58 agtattgcacttgtcccggcct 79
          ||||||||||||||||||||||
Sbjct: 52 agtattgcacttgtcccggcct 73




>RF00464;mir-92;FP015951.3/28649-28570 9823:Sus scrofa (pig)
          Length = 80

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 58 agtattgcacttgtcccggcct 79
          ||||||||||||||||||||||
Sbjct: 48 agtattgcacttgtcccggcct 69




>RF00464;mir-92;ABDC01275774.1/2124-2045 30608:Microcebus murinus
          (gray mouse lemur)
          Length = 80

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 58 agtattgcacttgtcccggcct 79
          ||||||||||||||||||||||
Sbjct: 48 agtattgcacttgtcccggcct 69




>RF00464;mir-92;AACZ02222074.1/3149-3227 9598:Pan troglodytes
          (chimpanzee)
          Length = 79

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 58 agtattgcacttgtcccggcct 79
          ||||||||||||||||||||||
Sbjct: 47 agtattgcacttgtcccggcct 68




>RF00464;mir-92;AAHY01210291.1/5443-5364 10090:Mus musculus (house
          mouse)
          Length = 80

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 58 agtattgcacttgtcccggcct 79
          ||||||||||||||||||||||
Sbjct: 48 agtattgcacttgtcccggcct 69




>RF00464;mir-92;AAGW01169230.1/2308-2388 9986:Oryctolagus
          cuniculus (rabbit)
          Length = 81

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 58 agtattgcacttgtcccggcct 79
          ||||||||||||||||||||||
Sbjct: 49 agtattgcacttgtcccggcct 70




>RF00464;mir-92;AAIY01238597.1/3124-3045 9371:Echinops telfairi
          (small Madagascar hedgehog)
          Length = 80

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 58 agtattgcacttgtcccggcct 79
          ||||||||||||||||||||||
Sbjct: 48 agtattgcacttgtcccggcct 69




>RF00464;mir-92;ABRQ01318667.1/1002-921 9813:Procavia capensis
          (cape rock hyrax)
          Length = 82

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 58 agtattgcacttgtcccggcct 79
          ||||||||||||||||||||||
Sbjct: 50 agtattgcacttgtcccggcct 71




>RF00464;mir-92;ABQF01018395.1/1757-1837 59729:Taeniopygia guttata
          Length = 81

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 58 agtattgcacttgtcccggcct 79
          ||||||||||||||||||||||
Sbjct: 49 agtattgcacttgtcccggcct 70




>RF00464;mir-92;CAAK05051440.1/15632-15557 7955:Danio rerio
          (zebrafish)
          Length = 76

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 58 agtattgcacttgtcccggcct 79
          ||||||||||||||||||||||
Sbjct: 44 agtattgcacttgtcccggcct 65




>RF00464;mir-92;ABEP02031048.1/3570-3494 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 77

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 60 tattgcacttgtcccggccttt 81
          ||||||||||||||||||||||
Sbjct: 47 tattgcacttgtcccggccttt 68