miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00663;mir-183;ABEP02026797.1/6738-6838 7739:Branchiostoma
           floridae (Florida lancelet)
          Length = 101

 Score =  196 bits (99), Expect = 4e-50
 Identities = 99/99 (100%)
 Strand = Plus / Plus

                                                                       
Query: 3   acgtgcccgttcacggtctatggcactggtagaattcactgatcgtagacaccagtgatt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acgtgcccgttcacggtctatggcactggtagaattcactgatcgtagacaccagtgatt 60

                                                  
Query: 63  cttcagtcagccatacaccgtggcgggaaactgatcatc 101
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cttcagtcagccatacaccgtggcgggaaactgatcatc 99




>RF00663;mir-183;AABS01000291.1/71818-71726 7719:Ciona
          intestinalis
          Length = 93

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 16 cggtctatggcactggtagaattcactg 43
          |||| |||||||||||||||||||||||
Sbjct: 14 cggtgtatggcactggtagaattcactg 41




>RF00663;mir-183;ABRQ01279950.1/461-562 9813:Procavia capensis
          (cape rock hyrax)
          Length = 102

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tatggcactggtagaattcactg 43
          |||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41




>RF00663;mir-183;CAAE01014715.1/320476-320375 99883:Tetraodon
          nigroviridis
          Length = 102

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tatggcactggtagaattcactg 43
          |||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41




>RF00663;mir-183;CAAB01003233.1/13960-13861 31033:Takifugu
          rubripes
          Length = 100

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tatggcactggtagaattcactg 43
          |||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41




>RF00663;mir-183;BAAF04047675.1/11891-11992 8090:Oryzias latipes
          (Japanese medaka)
          Length = 102

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tatggcactggtagaattcactg 43
          |||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41




>RF00663;mir-183;AAVX01005658.1/413-514 7868:Callorhinchus milii
          (ghost shark)
          Length = 102

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 tatggcactggtagaattcactg 43
          |||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41