miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00663;mir-183;ABEP02026797.1/6738-6838 7739:Branchiostoma
floridae (Florida lancelet)
Length = 101
Score = 196 bits (99), Expect = 4e-50
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 3 acgtgcccgttcacggtctatggcactggtagaattcactgatcgtagacaccagtgatt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acgtgcccgttcacggtctatggcactggtagaattcactgatcgtagacaccagtgatt 60
Query: 63 cttcagtcagccatacaccgtggcgggaaactgatcatc 101
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttcagtcagccatacaccgtggcgggaaactgatcatc 99
>RF00663;mir-183;AABS01000291.1/71818-71726 7719:Ciona
intestinalis
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 cggtctatggcactggtagaattcactg 43
|||| |||||||||||||||||||||||
Sbjct: 14 cggtgtatggcactggtagaattcactg 41
>RF00663;mir-183;ABRQ01279950.1/461-562 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tatggcactggtagaattcactg 43
|||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41
>RF00663;mir-183;CAAE01014715.1/320476-320375 99883:Tetraodon
nigroviridis
Length = 102
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tatggcactggtagaattcactg 43
|||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41
>RF00663;mir-183;CAAB01003233.1/13960-13861 31033:Takifugu
rubripes
Length = 100
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tatggcactggtagaattcactg 43
|||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41
>RF00663;mir-183;BAAF04047675.1/11891-11992 8090:Oryzias latipes
(Japanese medaka)
Length = 102
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tatggcactggtagaattcactg 43
|||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41
>RF00663;mir-183;AAVX01005658.1/413-514 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tatggcactggtagaattcactg 43
|||||||||||||||||||||||
Sbjct: 19 tatggcactggtagaattcactg 41