miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00673;mir-217;ABEP02005709.1/2697-2622 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 135 bits (68), Expect = 7e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ctgggactactgcatcaggaactgattggatgggatacaaatcaatctgttcctcatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ctgggactactgcatcaggaactgattggatgggatacaaatcaatctgttcctcatgca 63
Query: 61 tggctcac 68
||||||||
Sbjct: 64 tggctcac 71
>RF00673;mir-217;BX321898.29/71915-71810 7955:Danio rerio
(zebrafish)
Length = 106
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 tactgcatcaggaactgattggatg 32
|||||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattggatg 56
>RF00673;mir-217;AALT01617638.1/400-505 42254:Sorex araneus
(European shrew)
Length = 106
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tactgcatcaggaactgattggat 31
||||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattggat 55
>RF00673;mir-217;AAEX02023028.1/182472-182367 9615:Canis lupus
familiaris (dog)
Length = 106
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tactgcatcaggaactgattggat 31
||||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattggat 55
>RF00673;mir-217;AAPY01560156.1/2469-2364 37347:Tupaia belangeri
(northern tree shrew)
Length = 106
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tactgcatcaggaactgattggat 31
||||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattggat 55
>RF00673;mir-217;AAGW01552079.1/597-492 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tactgcatcaggaactgattggat 31
||||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattggat 55
>RF00673;mir-217;AADN02046841.1/20616-20511 9031:Gallus gallus
(chicken)
Length = 106
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tactgcatcaggaactgattggat 31
||||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattggat 55
>RF00673;mir-217;AAWZ01022332.1/98697-98592 28377:Anolis
carolinensis (green anole)
Length = 106
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tactgcatcaggaactgattgg 29
||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattgg 53
>RF00673;mir-217;CAAB01000324.1/13656-13761 31033:Takifugu
rubripes
Length = 106
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tactgcatcaggaactgattgg 29
||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattgg 53
>RF00673;mir-217;AANH01005109.1/22353-22248 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 106
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tactgcatcaggaactgattgg 29
||||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattgg 53
>RF00673;mir-217;BAAE01230814.1/1025-922 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tactgcatcaggaactgattgg 29
||||||||||||||||||||||
Sbjct: 30 tactgcatcaggaactgattgg 51
>RF00673;mir-217;AANN01395868.1/718-823 9365:Erinaceus europaeus
(western European hedgehog)
Length = 106
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 tactgcatcaggaactgattg 28
|||||||||||||||||||||
Sbjct: 32 tactgcatcaggaactgattg 52
