miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
          (papaya)
          Length = 82

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 11 ctgacagaagagagtgagcatatgcaagcaattgtat 47
          |||||||||||||||||||| | ||| ||||||||||
Sbjct: 1  ctgacagaagagagtgagcacacgcaggcaattgtat 37




>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
          (castor bean)
          Length = 83

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 11 ctgacagaagagagtgagcatatgcaagcaattgtat 47
          |||||||||||||||||||| | ||| ||||||||||
Sbjct: 1  ctgacagaagagagtgagcacacgcaggcaattgtat 37




>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
          Length = 83

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 11 ctgacagaagagagtgagcatatgcaagcaatt 43
          |||||||||||||||||||| ||||| ||||||
Sbjct: 1  ctgacagaagagagtgagcacatgcaggcaatt 33




>RF00073;mir-156;EU548312.1/193-274 3702:Arabidopsis thaliana
          (thale cress)
          Length = 82

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 ctgacagaagagagtgagcatatgca 36
          |||||||||||||||||||| |||||
Sbjct: 1  ctgacagaagagagtgagcacatgca 26