miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF525764.1/1593-1489 200361:Aegilops tauschii
           subsp. strangulata
          Length = 105

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 259 caaagactattattttgggacggagggagtatta 292
           ||||||| |||||||||||||| |||||||||||
Sbjct: 35  caaagacaattattttgggacgtagggagtatta 2




>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 261 aagactattattttgggacggagggagta 289
           ||||| |||||||||||||||||||||||
Sbjct: 73  aagacaattattttgggacggagggagta 101




>RF00906;MIR1122;AAAA02034555.1/16647-16527 39946:Oryza sativa
           Indica Group
          Length = 121

 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 269 tattttgggacggagggagtattat 293
           |||||||||||||||||||||||||
Sbjct: 58  tattttgggacggagggagtattat 34



 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 270 attttgggacggagggagtattat 293
           ||||||||||||||||||||||||
Sbjct: 65  attttgggacggagggagtattat 88




>RF00906;MIR1122;AAAA02026282.1/2845-2975 39946:Oryza sativa Indica
           Group
          Length = 131

 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 269 tattttgggacggagggagtattat 293
           |||||||||||||||||||||||||
Sbjct: 25  tattttgggacggagggagtattat 1




>RF00906;MIR1122;AACV01024885.1/21195-21061 39947:Oryza sativa
           Japonica Group
          Length = 135

 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 269 tattttgggacggagggagtattat 293
           |||||||||||||||||||||||||
Sbjct: 25  tattttgggacggagggagtattat 1




>RF00906;MIR1122;AAAA02007975.1/29302-29380 39946:Oryza sativa
           Indica Group
          Length = 79

 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 269 tattttgggacggagggagtattat 293
           |||||||||||||||||||||||||
Sbjct: 25  tattttgggacggagggagtattat 1




>RF00906;MIR1122;AACV01003595.1/38638-38749 39947:Oryza sativa
           Japonica Group
          Length = 112

 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 269 tattttgggacggagggagtattat 293
           |||||||||||||||||||||||||
Sbjct: 88  tattttgggacggagggagtattat 112




>RF00906;MIR1122;AAAA02019483.1/16379-16491 39946:Oryza sativa
           Indica Group
          Length = 113

 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 268 ttattttgggacggagggagtatta 292
           |||||||||||||||||||||||||
Sbjct: 88  ttattttgggacggagggagtatta 112




>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
           wheat)
          Length = 104

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 268 ttattttgggacggagggagtatt 291
           ||||||||||||||||||||||||
Sbjct: 79  ttattttgggacggagggagtatt 102



 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 26  ttattttgggacggagggagtat 4




>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
           subsp. dicoccoides
          Length = 105

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 268 ttattttgggacggagggagtatt 291
           ||||||||||||||||||||||||
Sbjct: 26  ttattttgggacggagggagtatt 3




>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 268 ttattttgggacggagggagtatt 291
           ||||||||||||||||||||||||
Sbjct: 80  ttattttgggacggagggagtatt 103




>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
          Length = 105

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 268 ttattttgggacggagggagtatt 291
           ||||||||||||||||||||||||
Sbjct: 80  ttattttgggacggagggagtatt 103




>RF00906;MIR1122;AAAA02004035.1/49440-49310 39946:Oryza sativa
           Indica Group
          Length = 131

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 269 tattttgggacggagggagtatta 292
           ||||||||||||||||||||||||
Sbjct: 107 tattttgggacggagggagtatta 130




>RF00906;MIR1122;AAAA02000966.1/612-453 39946:Oryza sativa Indica
           Group
          Length = 160

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 267 attattttgggacggagggagtat 290
           ||||||||||||||||||||||||
Sbjct: 27  attattttgggacggagggagtat 4




>RF00906;MIR1122;AAAA02033927.1/2539-2391 39946:Oryza sativa Indica
           Group
          Length = 149

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 269 tattttgggacggagggagtatta 292
           ||||||||||||||||||||||||
Sbjct: 125 tattttgggacggagggagtatta 148




>RF00906;MIR1122;AAAA02026694.1/32137-32261 39946:Oryza sativa
           Indica Group
          Length = 125

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 269 tattttgggacggagggagtatta 292
           ||||||||||||||||||||||||
Sbjct: 101 tattttgggacggagggagtatta 124




>RF00906;MIR1122;AL831801.4/77594-77709 4530:Oryza sativa (rice)
          Length = 116

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 269 tattttgggacggagggagtatta 292
           ||||||||||||||||||||||||
Sbjct: 92  tattttgggacggagggagtatta 115




>RF00906;MIR1122;AP003280.2/146720-146590 39947:Oryza sativa
           Japonica Group
          Length = 131

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 269 tattttgggacggagggagtatta 292
           ||||||||||||||||||||||||
Sbjct: 107 tattttgggacggagggagtatta 130




>RF00906;MIR1122;AAAA02028034.1/27580-27414 39946:Oryza sativa
           Indica Group
          Length = 167

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 269 tattttgggacggagggagtatta 292
           ||||||||||||||||||||||||
Sbjct: 143 tattttgggacggagggagtatta 166




>RF00906;MIR1122;AACV01024869.1/7310-7232 39947:Oryza sativa
           Japonica Group
          Length = 79

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 269 tattttgggacggagggagtatta 292
           ||||||||||||||||||||||||
Sbjct: 55  tattttgggacggagggagtatta 78




>RF00906;MIR1122;AAAA02018626.1/12551-12423 39946:Oryza sativa
           Indica Group
          Length = 129

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 268 ttattttgggacggagggagtatt 291
           ||||||||||||||||||||||||
Sbjct: 104 ttattttgggacggagggagtatt 127




>RF00906;MIR1122;AY947286.1/128-10 4530:Oryza sativa (rice)
          Length = 119

 Score = 48.1 bits (24), Expect = 8e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 269 tattttgggacggagggagtatta 292
           ||||||||||||||||||||||||
Sbjct: 25  tattttgggacggagggagtatta 2




>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
           Japonica Group
          Length = 245

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 223 ttattttgggacggagggagtat 245




>RF01058;MIR806;AP008208.1/24144061-24144300 39947:Oryza sativa
           Japonica Group
          Length = 240

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 23  ttattttgggacggagggagtat 1




>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
           Japonica Group
          Length = 244

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 23  ttattttgggacggagggagtat 1




>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa Indica
           Group
          Length = 243

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 23  ttattttgggacggagggagtat 1




>RF01058;MIR806;AACV01004890.1/11000-11239 39947:Oryza sativa
           Japonica Group
          Length = 240

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 218 ttattttgggacggagggagtat 240




>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
           Group
          Length = 241

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 219 ttattttgggacggagggagtat 241




>RF00906;MIR1122;ABXC01006480.1/93142-93031 4558:Sorghum bicolor
           (sorghum)
          Length = 112

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 26  ttattttgggacggagggagtat 4




>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
           wheat)
          Length = 107

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 26  ttattttgggacggagggagtat 4




>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
           wheat)
          Length = 105

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 80  ttattttgggacggagggagtat 102




>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
          Length = 68

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 26  ttattttgggacggagggagtat 4




>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
          Length = 153

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 128 ttattttgggacggagggagtat 150




>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
           (bread wheat)
          Length = 135

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 267 attattttgggacggagggagtattat 293
           |||||||| ||||||||||||||||||
Sbjct: 109 attatttttggacggagggagtattat 135




>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
           wheat)
          Length = 125

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 269 tattttgggacggagggagtatt 291
           |||||||||||||||||||||||
Sbjct: 25  tattttgggacggagggagtatt 3




>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
          Length = 116

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 91  ttattttgggacggagggagtat 113




>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
          Length = 104

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 79  ttattttgggacggagggagtat 101




>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 80  ttattttgggacggagggagtat 102




>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
          Length = 105

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 26  ttattttgggacggagggagtat 4




>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
          Length = 105

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 26  ttattttgggacggagggagtat 4




>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
          Length = 106

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 81  ttattttgggacggagggagtat 103




>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
          Length = 132

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 26  ttattttgggacggagggagtat 4




>RF00906;MIR1122;AAAA02025635.1/7223-7330 39946:Oryza sativa Indica
           Group
          Length = 108

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 269 tattttgggacggagggagtatt 291
           |||||||||||||||||||||||
Sbjct: 25  tattttgggacggagggagtatt 3




>RF00906;MIR1122;AACV01004030.1/351-512 39947:Oryza sativa Japonica
           Group
          Length = 162

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 269 tattttgggacggagggagtatt 291
           |||||||||||||||||||||||
Sbjct: 138 tattttgggacggagggagtatt 160




>RF00906;MIR1122;AAAA02028442.1/1248-1113 39946:Oryza sativa Indica
           Group
          Length = 136

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 26  ttattttgggacggagggagtat 4




>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
           Indica Group
          Length = 122

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 97  ttattttgggacggagggagtat 119




>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
           Japonica Group
          Length = 92

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 26  ttattttgggacggagggagtat 4




>RF00906;MIR1122;AACV01020861.1/25006-25108 39947:Oryza sativa
           Japonica Group
          Length = 103

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 26  ttattttgggacggagggagtat 4




>RF00906;MIR1122;AP003303.4/77673-77577 39947:Oryza sativa Japonica
           Group
          Length = 97

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 26  ttattttgggacggagggagtat 4




>RF00906;MIR1122;AP008207.1/22739295-22739406 39947:Oryza sativa
           Japonica Group
          Length = 112

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 269 tattttgggacggagggagtatt 291
           |||||||||||||||||||||||
Sbjct: 88  tattttgggacggagggagtatt 110




>RF00906;MIR1122;AC079357.3/127350-127255 39947:Oryza sativa
           Japonica Group
          Length = 96

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 269 tattttgggacggagggagtatt 291
           |||||||||||||||||||||||
Sbjct: 72  tattttgggacggagggagtatt 94




>RF00906;MIR1122;AACV01001981.1/7100-7193 39947:Oryza sativa
           Japonica Group
          Length = 94

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 ttattttgggacggagggagtat 290
           |||||||||||||||||||||||
Sbjct: 26  ttattttgggacggagggagtat 4




>RF00906;MIR1122;AC226706.2/62906-62750 63629:Oryza minuta
          Length = 157

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 269 tattttgggacggagggagtatt 291
           |||||||||||||||||||||||
Sbjct: 133 tattttgggacggagggagtatt 155




>RF00906;MIR1122;AAAA02007660.1/3740-3838 39946:Oryza sativa Indica
           Group
          Length = 99

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 269 tattttgggacggagggagtatt 291
           |||||||||||||||||||||||
Sbjct: 75  tattttgggacggagggagtatt 97




>RF00906;MIR1122;AP008215.1/21144119-21144034 39947:Oryza sativa
           Japonica Group
          Length = 86

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 269 tattttgggacggagggagtatt 291
           |||||||||||||||||||||||
Sbjct: 25  tattttgggacggagggagtatt 3