miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF521177.1/27342-27466 4513:Hordeum vulgare
          Length = 125

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 11  attttgggacggagggagtatgaa 34
           ||||||||||||||||||||||||
Sbjct: 102 attttgggacggagggagtatgaa 125




>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
          Length = 132

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 11 attttgggacggagggagtatgaa 34
          ||||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatgaa 1




>RF00906;MIR1122;CR954190.2/110040-110176 3880:Medicago truncatula
          (barrel medic)
          Length = 137

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 10 cattttgggacggagggagtatg 32
          |||||||||||||||||||||||
Sbjct: 25 cattttgggacggagggagtatg 3



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 10  cattttgggacggagggagtat 31
           ||||||||||||||||||||||
Sbjct: 113 cattttgggacggagggagtat 134




>RF01058;MIR806;AAAA02026783.1/9702-9457 39946:Oryza sativa Indica
          Group
          Length = 246

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 10 cattttgggacggagggagtat 31
          ||||||||||||||||||||||
Sbjct: 22 cattttgggacggagggagtat 1




>RF01058;MIR806;AAAA02017199.1/23024-23263 39946:Oryza sativa
          Indica Group
          Length = 240

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 10 cattttgggacggagggagtat 31
          ||||||||||||||||||||||
Sbjct: 22 cattttgggacggagggagtat 1




>RF00906;MIR1122;ABXC01006480.1/93142-93031 4558:Sorghum bicolor
          (sorghum)
          Length = 112

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 11 attttgggacggagggagtatg 32
          ||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3




>RF00906;MIR1122;AACV01022102.1/8073-7952 39947:Oryza sativa
          Japonica Group
          Length = 122

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 12 ttttgggacggagggagtatga 33
          ||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtatga 2




>RF00906;MIR1122;AAAA02028442.1/1248-1113 39946:Oryza sativa
          Indica Group
          Length = 136

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 11 attttgggacggagggagtatg 32
          ||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3




>RF00906;MIR1122;AAAA02018379.1/19319-19440 39946:Oryza sativa
           Indica Group
          Length = 122

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 11  attttgggacggagggagtatg 32
           ||||||||||||||||||||||
Sbjct: 99  attttgggacggagggagtatg 120




>RF00906;MIR1122;AC215820.3/114332-114188 4537:Oryza punctata
          Length = 145

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 11 attttgggacggagggagtatg 32
          ||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3




>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
          Japonica Group
          Length = 92

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 11 attttgggacggagggagtatg 32
          ||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3




>RF00906;MIR1122;AL831801.4/77594-77709 4530:Oryza sativa (rice)
          Length = 116

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 10 cattttgggacggagggagtat 31
          ||||||||||||||||||||||
Sbjct: 25 cattttgggacggagggagtat 4




>RF00906;MIR1122;AAAA02030464.1/12601-12722 39946:Oryza sativa
          Indica Group
          Length = 122

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 12 ttttgggacggagggagtatga 33
          ||||||||||||||||||||||
Sbjct: 23 ttttgggacggagggagtatga 2




>RF00906;MIR1122;AACV01020861.1/25006-25108 39947:Oryza sativa
          Japonica Group
          Length = 103

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 11 attttgggacggagggagtatg 32
          ||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3




>RF00906;MIR1122;AP003303.4/77673-77577 39947:Oryza sativa
          Japonica Group
          Length = 97

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 11 attttgggacggagggagtatg 32
          ||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3




>RF00906;MIR1122;AAAA02022032.1/23143-22996 39946:Oryza sativa
           Indica Group
          Length = 148

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 12  ttttgggacggagggagtatga 33
           ||||||||||||||||||||||
Sbjct: 126 ttttgggacggagggagtatga 147




>RF00906;MIR1122;AP005421.3/127890-127779 39947:Oryza sativa
          Japonica Group
          Length = 112

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 11 attttgggacggagggagtatg 32
          ||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3




>RF00906;MIR1122;AACV01001981.1/7100-7193 39947:Oryza sativa
          Japonica Group
          Length = 94

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 11 attttgggacggagggagtatg 32
          ||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3




>RF00906;MIR1122;AL662938.3/6940-7051 39947:Oryza sativa Japonica
          Group
          Length = 112

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 10 cattttgggacggagggagtat 31
          ||||||||||||||||||||||
Sbjct: 25 cattttgggacggagggagtat 4




>RF00906;MIR1122;AP008215.1/18970521-18970611 39947:Oryza sativa
          Japonica Group
          Length = 91

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 11 attttgggacggagggagtatg 32
          ||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3




>RF00906;MIR1122;AACV01018660.1/8916-9023 39947:Oryza sativa
          Japonica Group
          Length = 108

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 10 cattttgggacggagggagtat 31
          ||||||||||||||||||||||
Sbjct: 25 cattttgggacggagggagtat 4




>RF00906;MIR1122;AC121366.4/55476-55582 39947:Oryza sativa
          Japonica Group
          Length = 107

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 11 attttgggacggagggagtatg 32
          ||||||||||||||||||||||
Sbjct: 24 attttgggacggagggagtatg 3