miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;EU548312.1/193-274 3702:Arabidopsis thaliana (thale
           cress)
          Length = 82

 Score =  147 bits (74), Expect = 4e-35
 Identities = 80/82 (97%)
 Strand = Plus / Plus

                                                                       
Query: 21  ctgacagaagagagtgagcacatgcaggcactgttatgtgtccattactttgcgtgtgcg 80
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1   ctgacagaagagagtgagcacatgcaggcactgttatgtgtcgataactttgcgtgtgcg 60

                                 
Query: 81  tgctcacctctctttctgtcag 102
           ||||||||||||||||||||||
Sbjct: 61  tgctcacctctctttctgtcag 82




>RF00073;mir-156;ABIM01011291.1/8261-8180 3649:Carica papaya
           (papaya)
          Length = 82

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                       
Query: 21  ctgacagaagagagtgagcacatgcaggcactgttatgtgtccattactttgcgtgtgcg 80
           |||||||||||||||||||||| ||||||| |  ||||    |||  ||||||| |||||
Sbjct: 1   ctgacagaagagagtgagcacacgcaggcaattgtatgaaggcatacctttgcgggtgcg 60

                                 
Query: 81  tgctcacctctctttctgtcag 102
           ||||||| ||||||||||||||
Sbjct: 61  tgctcacttctctttctgtcag 82




>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
          Length = 83

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 21 ctgacagaagagagtgagcacatgcaggca 50
          ||||||||||||||||||||||||||||||
Sbjct: 1  ctgacagaagagagtgagcacatgcaggca 30



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 76  gtgcgtgctcacctctctttctgtcag 102
           |||||||||||||||||||||||||||
Sbjct: 57  gtgcgtgctcacctctctttctgtcag 83




>RF00073;mir-156;AASG02015394.1/3647-3565 3988:Ricinus communis
           (castor bean)
          Length = 83

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 76  gtgcgtgctcacctctctttctgtcag 102
           |||||||||||||||||||||||||||
Sbjct: 57  gtgcgtgctcacctctctttctgtcag 83



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 21 ctgacagaagagagtgagcacatgcaggca 50
          |||||||||||||||||||||| |||||||
Sbjct: 1  ctgacagaagagagtgagcacacgcaggca 30




>RF00073;mir-156;AC159537.24/87146-87063 3880:Medicago truncatula
          (barrel medic)
          Length = 84

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 22 tgacagaagagagtgagcacatgc 45
          ||||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacatgc 25



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 76  gtgcgtgctcacctctctttctgtca 101
           |||||||||||| |||||||||||||
Sbjct: 58  gtgcgtgctcacttctctttctgtca 83




>RF00073;mir-156;EF692358.1/99-183 3899:Trifolium repens (white
          clover)
          Length = 85

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 tgacagaagagagtgagcacatg 44
          |||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacatg 24




>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
          (thale cress)
          Length = 84

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ctgacagaagagagtgagcaca 42
          ||||||||||||||||||||||
Sbjct: 1  ctgacagaagagagtgagcaca 22




>RF00073;mir-156;AARH01007531.1/19950-19866 3694:Populus
          trichocarpa
          Length = 85

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ctgacagaagagagtgagcaca 42
          ||||||||||||||||||||||
Sbjct: 1  ctgacagaagagagtgagcaca 22




>RF00073;mir-156;AARH01003087.1/284432-284516 3694:Populus
          trichocarpa
          Length = 85

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ctgacagaagagagtgagcaca 42
          ||||||||||||||||||||||
Sbjct: 1  ctgacagaagagagtgagcaca 22




>RF00073;mir-156;CU019603.9/39808-39728 3880:Medicago truncatula
          (barrel medic)
          Length = 81

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tgacagaagagagtgagcacat 43
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacat 23




>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
          Length = 88

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tgacagaagagagtgagcacat 43
          ||||||||||||||||||||||
Sbjct: 2  tgacagaagagagtgagcacat 23




>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
          Length = 82

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ctgacagaagagagtgagcaca 42
          ||||||||||||||||||||||
Sbjct: 1  ctgacagaagagagtgagcaca 22




>RF00073;mir-156;EU957877.1/286-402 4577:Zea mays
          Length = 117

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 77  tgcgtgctcacctctctttctgtcag 102
           ||||||||||| ||||||||||||||
Sbjct: 92  tgcgtgctcacttctctttctgtcag 117




>RF00073;mir-156;ABXC01001399.1/20364-20487 4558:Sorghum bicolor
           (sorghum)
          Length = 124

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 77  tgcgtgctcacctctctttctgtcag 102
           ||||||||||| ||||||||||||||
Sbjct: 99  tgcgtgctcacttctctttctgtcag 124




>RF00073;mir-156;ABXC01004937.1/5197-5315 4558:Sorghum bicolor
          (sorghum)
          Length = 119

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ctgacagaagagagtgagcaca 42
          ||||||||||||||||||||||
Sbjct: 1  ctgacagaagagagtgagcaca 22




>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
          grass)
          Length = 103

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ctgacagaagagagtgagcaca 42
          ||||||||||||||||||||||
Sbjct: 1  ctgacagaagagagtgagcaca 22




>RF00073;mir-156;AP005429.3/80050-80161 39947:Oryza sativa
          Japonica Group
          Length = 112

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ctgacagaagagagtgagcaca 42
          ||||||||||||||||||||||
Sbjct: 1  ctgacagaagagagtgagcaca 22




>RF00073;mir-156;AAAA02027469.1/16633-16520 39946:Oryza sativa
          Indica Group
          Length = 114

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ctgacagaagagagtgagcaca 42
          ||||||||||||||||||||||
Sbjct: 1  ctgacagaagagagtgagcaca 22




>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
          Length = 93

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ctgacagaagagagtgagcaca 42
          ||||||||||||||||||||||
Sbjct: 1  ctgacagaagagagtgagcaca 22




>RF00073;mir-156;EU004275.2/501-588 39946:Oryza sativa Indica
          Group
          Length = 88

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ctgacagaagagagtgagcaca 42
          ||||||||||||||||||||||
Sbjct: 1  ctgacagaagagagtgagcaca 22