miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ711031.1/1293-1203 4586:Psathyrostachys juncea
Length = 91
Score = 65.9 bits (33), Expect = 7e-11
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 1 actccctccgtcccaaaatgtaaaac-ttttttgacactatgatagtatcaaaaaacgtc 59
|||||||| |||||| ||| ||| || |||||||||||||||| ||| ||||||||||||
Sbjct: 86 actccctctgtcccataatataagacgttttttgacactatgacagtgtcaaaaaacgtc 27
Query: 60 ttaca 64
|||||
Sbjct: 26 ttaca 22
Score = 50.1 bits (25), Expect = 4e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 27 ttttttgacactatgatagtatcaaaaaacgtcttacattttggg 71
|||||||||||| | ||||| ||||||||||||||| ||| ||||
Sbjct: 31 ttttttgacactgtcatagtgtcaaaaaacgtcttatattatggg 75
>RF00906;MIR1122;FJ711046.1/1205-1295 220462:Leymus arenarius
Length = 91
Score = 60.0 bits (30), Expect = 4e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 27 ttttttgacactatgatagtatcaaaaaacgtcttaca 64
|||||||||||||||| ||| |||||||||||||||||
Sbjct: 33 ttttttgacactatgacagtgtcaaaaaacgtcttaca 70
Score = 50.1 bits (25), Expect = 4e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 27 ttttttgacactatgatagtatcaaaaaacgtcttacattttggg 71
|||||||||||| | ||||| ||||||||||||||| ||| ||||
Sbjct: 61 ttttttgacactgtcatagtgtcaaaaaacgtcttatattatggg 17
>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
Length = 111
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Minus
Query: 1 actccctccgtcccaaaatgtaaaac-ttttttgacactatgatagtatcaaaaaacgtc 59
||||||||||||||| |||||| || ||||||||||||| |||| ||||||||||||
Sbjct: 106 actccctccgtcccataatgtaggacgttttttgacactacactagtgtcaaaaaacgtc 47
Query: 60 ttaca 64
|||||
Sbjct: 46 ttaca 42
Score = 48.1 bits (24), Expect = 2e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 27 ttttttgacactatgatagtatcaaaaaacgtcttacattttgggtcggagg 78
||||||||||||| |||| |||||||||||| |||||| |||| ||||||
Sbjct: 51 ttttttgacactagtgtagtgtcaaaaaacgtcctacattatgggacggagg 102
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 48 tcaaaaaacgtcttacattttgggtcggagg 78
||||||||||||||||||| |||| ||||||
Sbjct: 40 tcaaaaaacgtcttacattatgggacggagg 10
>RF00906;MIR1122;EF426564.1/124146-124054 4571:Triticum turgidum
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 28 tttttgacactatgatagtatcaaaaaacgtcttacattttgggtcggagg 78
|||||||||||| |||||||||||||| ||||||||| |||| ||||||
Sbjct: 60 tttttgacactagtgtagtatcaaaaaacctcttacattatgggacggagg 10
>RF00906;MIR1122;CR855143.1/66136-66012 4530:Oryza sativa (rice)
Length = 125
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1 actccctccgtcccaaaatgtaaaactttt 30
||||||||||||||||||| ||||||||||
Sbjct: 120 actccctccgtcccaaaatataaaactttt 91
>RF00906;MIR1122;AL606691.4/2041-1917 39947:Oryza sativa Japonica
Group
Length = 125
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 1 actccctccgtcccaaaatgtaaaactttt 30
||||||||||||||||||| ||||||||||
Sbjct: 120 actccctccgtcccaaaatataaaactttt 91
>RF00906;MIR1122;DQ247823.1/803-901 4487:Aegilops searsii
Length = 99
Score = 50.1 bits (25), Expect = 4e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 43 tagtatcaaaaaacgtcttacattttgggtcggagga 79
|||| ||||||||||||||||||| |||| |||||||
Sbjct: 56 tagtgtcaaaaaacgtcttacattatgggacggagga 92
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 1 actccctccgtcccaaaatgtaaaac-ttttttgacacta 39
||||||||||||||| ||||||| || |||||||||||||
Sbjct: 88 actccctccgtcccataatgtaagacgttttttgacacta 49
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 43 tagtatcaaaaaacgtcttacattttgggtcggagg 78
|||| ||||||||||||||||||| |||| ||||||
Sbjct: 49 tagtgtcaaaaaacgtcttacattatgggacggagg 84
>RF00906;MIR1122;FJ436986.1/65665-65790 37682:Aegilops tauschii
Length = 126
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 43 tagtatcaaaaaacgtcttacattttgggtcggagg 78
|||| ||||||||||||||||||| |||| ||||||
Sbjct: 27 tagtgtcaaaaaacgtcttacattatgggacggagg 62
>RF00906;MIR1122;AC161407.5/87285-87421 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 actccctccgtcccaaaatgtaa 23
|||||||||||||||||||||||
Sbjct: 132 actccctccgtcccaaaatgtaa 110
>RF00906;MIR1122;CR954190.2/110040-110176 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 actccctccgtcccaaaatgtaa 23
|||||||||||||||||||||||
Sbjct: 6 actccctccgtcccaaaatgtaa 28
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 actccctccgtcccaaaatgtaa 23
|||||||||||||||||||||||
Sbjct: 132 actccctccgtcccaaaatgtaa 110
>RF00906;MIR1122;AB298184.1/14323-14229 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 50 aaaaaacgtcttacattttgggtcggaggaa 80
||||||||||||||||| |||| ||||||||
Sbjct: 58 aaaaaacgtcttacattatgggacggaggaa 88
>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 66/79 (83%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 1 actccctccgtcccaaaatgtaaaacttttttg-acactatgatagtatcaaaaaacgtc 59
|||||||| |||||| ||| |||||| ||||| |||||| |||| ||||||| ||||
Sbjct: 88 actccctctgtcccataatataaaacgtttttccacactagtgtagtgtcaaaaagcgtc 29
Query: 60 ttacattttgggtcggagg 78
||||||| |||| ||||||
Sbjct: 28 ttacattatgggacggagg 10
>RF00906;MIR1122;EU187471.1/291-190 40247:Dasypyrum villosum
Length = 102
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 50 aaaaaacgtcttacattttgggtcggaggaa 80
||||||||||||||||| |||| ||||||||
Sbjct: 38 aaaaaacgtcttacattatgggacggaggaa 8
Score = 46.1 bits (23), Expect = 7e-05
Identities = 62/74 (83%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 5 cctccgtcccaaaatgtaaaac--ttttttgacactatgatagtatcaaaaaacgtctta 62
||||||||||| ||||||| || ||||||||||||| || | | |||| ||||||||
Sbjct: 10 cctccgtcccataatgtaagacgtttttttgacactacactaatgttaaaagacgtctta 69
Query: 63 cattttgggtcgga 76
||||||||| ||||
Sbjct: 70 cattttgggacgga 83
>RF00906;MIR1122;AAAA02033663.1/22175-22286 39946:Oryza sativa
Indica Group
Length = 112
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 actccctccgtcccaaaatgtaa 23
|||||||||||||||||||||||
Sbjct: 6 actccctccgtcccaaaatgtaa 28
>RF00906;MIR1122;AP008215.1/20036672-20036557 39947:Oryza sativa
Japonica Group
Length = 116
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 actccctccgtcccaaaatgtaa 23
|||||||||||||||||||||||
Sbjct: 6 actccctccgtcccaaaatgtaa 28
>RF00906;MIR1122;AACV01018440.1/8398-8301 39947:Oryza sativa
Japonica Group
Length = 98
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 actccctccgtcccaaaatgtaa 23
|||||||||||||||||||||||
Sbjct: 93 actccctccgtcccaaaatgtaa 71
>RF00906;MIR1122;AP005510.3/22168-22263 39947:Oryza sativa
Japonica Group
Length = 96
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 actccctccgtcccaaaatgtaa 23
|||||||||||||||||||||||
Sbjct: 6 actccctccgtcccaaaatgtaa 28
>RF00906;MIR1122;AP005399.3/486-590 39947:Oryza sativa Japonica
Group
Length = 105
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 actccctccgtcccaaaatgtaa 23
|||||||||||||||||||||||
Sbjct: 100 actccctccgtcccaaaatgtaa 78
>RF00906;MIR1122;AL662938.3/6940-7051 39947:Oryza sativa Japonica
Group
Length = 112
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 actccctccgtcccaaaatgtaa 23
|||||||||||||||||||||||
Sbjct: 6 actccctccgtcccaaaatgtaa 28
>RF00906;MIR1122;AP005676.3/140751-140855 39947:Oryza sativa
Japonica Group
Length = 105
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 actccctccgtcccaaaatgtaa 23
|||||||||||||||||||||||
Sbjct: 100 actccctccgtcccaaaatgtaa 78
>RF00906;MIR1122;AACV01018660.1/8916-9023 39947:Oryza sativa
Japonica Group
Length = 108
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 actccctccgtcccaaaatgtaa 23
|||||||||||||||||||||||
Sbjct: 6 actccctccgtcccaaaatgtaa 28
>RF01058;MIR806;AC232167.1/58295-58055 63629:Oryza minuta
Length = 241
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 actccctccgtcccaaaatgta 22
||||||||||||||||||||||
Sbjct: 3 actccctccgtcccaaaatgta 24
>RF01058;MIR806;AAAA02017199.1/23024-23263 39946:Oryza sativa
Indica Group
Length = 240
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 actccctccgtcccaaaatgta 22
||||||||||||||||||||||
Sbjct: 3 actccctccgtcccaaaatgta 24
>RF00906;MIR1122;AC127019.29/109198-109062 3880:Medicago
truncatula (barrel medic)
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 ctccctccgtcccaaaatgtaa 23
||||||||||||||||||||||
Sbjct: 7 ctccctccgtcccaaaatgtaa 28
>RF00906;MIR1122;FJ436986.1/65183-65072 37682:Aegilops tauschii
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 47/53 (88%), Gaps = 3/53 (5%)
Strand = Plus / Minus
Query: 14 caaaatgtaaaac-ttttttgacactatgatagtatcaaaaaacgtcttacat 65
|||||||||| || |||||||||||| |||| | ||||||||||||||||||
Sbjct: 94 caaaatgtaagacattttttgacact--gataatgtcaaaaaacgtcttacat 44
>RF00906;MIR1122;AL831801.4/77594-77709 4530:Oryza sativa (rice)
Length = 116
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 actccctccgtcccaaaatgta 22
||||||||||||||||||||||
Sbjct: 6 actccctccgtcccaaaatgta 27
