miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;BAAF04020747.1/88-147 8090:Oryzias latipes
(Japanese medaka)
Length = 60
Score = 87.7 bits (44), Expect = 2e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 15 atctttggttatctagctgtatgagtgtattggtcttcataaagctagataaccgaaagt 74
|||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagtgttctgctcgtcataaagctagataaccgaaagt 60
>RF00237;mir-9;AAGU02809341.1/1530-1589 9785:Loxodonta africana
(African savanna elephant)
Length = 60
Score = 83.8 bits (42), Expect = 3e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 21 ggttatctagctgtatgagtgtattggtcttcataaagctagataaccgaaagt 74
||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 7 ggttatctagctgtatgagtgtattttccttcataaagctagataaccgaaagt 60
>RF00237;mir-9;BAAF04134102.1/794-855 8090:Oryzias latipes
(Japanese medaka)
Length = 62
Score = 73.8 bits (37), Expect = 3e-13
Identities = 58/63 (92%), Gaps = 4/63 (6%)
Strand = Plus / Plus
Query: 15 atctttggttatctagctgtatgagt---gtattggtcttcataaagctagataaccgaa 71
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagtgccgtatt-ttcttcataaagctagataaccgaa 59
Query: 72 agt 74
|||
Sbjct: 60 agt 62
>RF00237;mir-9;AAVX01065791.1/2124-2183 7868:Callorhinchus milii
(ghost shark)
Length = 60
Score = 69.9 bits (35), Expect = 5e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtgtattggtcttcataaagctagataaccgaaagt 74
||||||||||||||||||||||||| |||| | ||||||||||| ||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtttattcaccgtcataaagctaaataaccgaaagt 60
>RF00237;mir-9;ABVD01485145.1/30-90 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 61
Score = 65.9 bits (33), Expect = 8e-11
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 15 atctttggttatctagctgtatgagtgtattggtct-tcataaagctagataaccgaaag 73
||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagtggtgtggagtctcataaagctagataaccgaaag 60
Query: 74 t 74
|
Sbjct: 61 t 61
>RF00237;mir-9;ABRT010326462.1/47-105 9478:Tarsius syrichta
(Philippine tarsier)
Length = 59
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 42 tattggtcttcataaagctagataaccgaaagt 74
|||||||||||||||||||||||||||||||||
Sbjct: 27 tattggtcttcataaagctagataaccgaaagt 59
>RF00237;mir-9;AAPN01432088.1/257-198 9258:Ornithorhynchus
anatinus (platypus)
Length = 60
Score = 63.9 bits (32), Expect = 3e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtgtattggtcttcataaagctagataaccgaa 71
||||||||||||||||||||||||||||| | ||||||||||||| |||||||
Sbjct: 2 tctttggttatctagctgtatgagtgtatgtgatgtcataaagctagagaaccgaa 57
>RF00237;mir-9;AAGV020387958.1/714-775 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 62
Score = 63.9 bits (32), Expect = 3e-10
Identities = 50/55 (90%), Gaps = 2/55 (3%)
Strand = Plus / Plus
Query: 15 atctttggttatctagctgtatgagtgtattg--gtcttcataaagctagataac 67
||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagtggtgtggagtcttcataaagctagataac 55
>RF00237;mir-9;ABIR01000787.1/71736-71795 6334:Trichinella
spiralis
Length = 60
Score = 61.9 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtgtattggtcttcataaagctag 62
|||||||||||||||||||||||||||| || | ||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtgtactgagcgtcataaagctag 48
>RF00237;mir-9;AAAB01008960.1/1144939-1144878 180454:Anopheles
gambiae str. PEST
Length = 62
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtgtatt 45
||||||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtgtatt 31
>RF00237;mir-9;ABRR01432464.1/48-109 30538:Lama pacos (alpaca)
Length = 62
Score = 54.0 bits (27), Expect = 3e-07
Identities = 48/54 (88%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 23 ttatctagctgtatgagtgtattgg--tcttcataaagctagataaccgaaagt 74
||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 9 ttatctagctgtatgagtggtgtggagtattcataaagctagataaccgaaagt 62
>RF00237;mir-9;BAAE01106217.1/407-468 8090:Oryzias latipes
(Japanese medaka)
Length = 62
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtgt 42
|||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtgt 28
>RF00237;mir-9;ABLF01047176.1/4611-4545 7029:Acyrthosiphon pisum
(pea aphid)
Length = 67
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtgt 42
|||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtgt 28
>RF00237;mir-9;ABRQ01039829.1/2882-2943 9813:Procavia capensis
(cape rock hyrax)
Length = 62
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtg 41
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;BAAF04047241.1/1745-1804 8090:Oryzias latipes
(Japanese medaka)
Length = 60
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 atctttggttatctagctgtatgagt 40
||||||||||||||||||||||||||
Sbjct: 1 atctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAPU01011594.1/225879-225819 7230:Drosophila
mojavensis
Length = 61
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtg 41
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;ABJB010367147.1/2213-2272 6945:Ixodes scapularis
(black-legged tick)
Length = 60
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtg 41
||||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagtg 27
>RF00237;mir-9;CAAK05014843.1/1888-1946 7955:Danio rerio
(zebrafish)
Length = 59
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagt 40
|||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAVX01083387.1/420-360 7868:Callorhinchus milii
(ghost shark)
Length = 61
Score = 50.1 bits (25), Expect = 5e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtgtatt-ggtcttcataaagctagataaccgaa 71
||||||||| ||||||||||||||||| || ||||||||||||||| |||||||
Sbjct: 2 tctttggttttctagctgtatgagtgtgttataccttcataaagctagacaaccgaa 58
>RF00237;mir-9;AAJJ01000398.1/19121-19058 7070:Tribolium castaneum
(red flour beetle)
Length = 64
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagt 40
|||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgagt 26
>RF00237;mir-9;AAQA01000025.1/15457-15396 6279:Brugia malayi
Length = 62
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 ctttggttatctagctgtatgagt 40
||||||||||||||||||||||||
Sbjct: 3 ctttggttatctagctgtatgagt 26
>RF00237;mir-9;ABEP02027847.1/93613-93673 7739:Branchiostoma
floridae (Florida lancelet)
Length = 61
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgag 39
||||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatgag 25
>RF00237;mir-9;AAZO01004437.1/24877-24818 121224:Pediculus humanus
corporis (human body louse)
Length = 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatgagtgtattggtcttcataaagctagataaccgaa 71
|||||||||||||||||||||| | | ||| ||||||||||||| || ||||||
Sbjct: 2 tctttggttatctagctgtatggatattttgaacttcataaagctacattaccgaa 57
>RF00237;mir-9;AAST01027169.1/135-76 7240:Drosophila simulans
Length = 60
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 tttggttatctagctgtatgagtg 41
||||||||||||||||||||||||
Sbjct: 4 tttggttatctagctgtatgagtg 27
>RF00237;mir-9;ABKE01012786.1/839-779 54126:Pristionchus pacificus
Length = 61
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tctttggttatctagctgtatga 38
|||||||||||||||||||||||
Sbjct: 2 tctttggttatctagctgtatga 24
