miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;ABRQ01011010.1/8721-8795 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 133 bits (67), Expect = 5e-31
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgtggtatccatatagtcacagattcgattct 78
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtggtatccacgtagtcacagattcgattct 60
Query: 79 aggggaatatatggt 93
|||||||||||||||
Sbjct: 61 aggggaatatatggt 75
>RF00104;mir-10;AC145806.2/102674-102746 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 73
Score = 87.7 bits (44), Expect = 3e-17
Identities = 68/75 (90%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgtggtatccatatagtcacagattcgattct 78
|||||| |||||||||||||||||||||||||| | | || ||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtgg--ttcgtacagtcacagattcgattct 58
Query: 79 aggggaatatatggt 93
||||| |||||||||
Sbjct: 59 agggggatatatggt 73
>RF00104;mir-10;DQ481668.1/168869-168943 31033:Takifugu rubripes
Length = 75
Score = 83.8 bits (42), Expect = 4e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgtggtatccatatagtcacagattcgattct 78
|||||||||||||||||||||||||||||||| | | | ||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtgatggcgtcaaagtcacagattcgattct 60
Query: 79 aggggaatatatgg 92
|||||| |||||||
Sbjct: 61 aggggagtatatgg 74
>RF00104;mir-10;FJ497007.1/255336-255410 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 75
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgtg 50
||||||||||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;BAAE01096977.1/80-154 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgtg 50
||||||||||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;AAVX01239926.1/451-377 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgt 49
|||||||||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;ABPM01028404.1/870-945 106582:Maylandia zebra
(zebra mbuna)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/67 (88%), Gaps = 4/67 (5%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgtg--gtatccatatagtcacagattcgatt 76
|||||||||||||||||||||||||| ||||| | | ||| || ||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaattggtgtgatgaaaccagat--tcacagattcgatt 58
Query: 77 ctagggg 83
|||||||
Sbjct: 59 ctagggg 65
>RF00104;mir-10;AB232922.1/86430-86356 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgtgg 51
|||||| ||||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtgg 33
>RF00104;mir-10;CAAB01001327.1/34126-34200 31033:Takifugu rubripes
Length = 75
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgtg 50
|||||| |||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgtg 50
|||||||||||||||||| |||||||||||||
Sbjct: 1 ctatatataccctgtagatccgaatttgtgtg 32
>RF00104;mir-10;BX546447.8/26541-26615 7955:Danio rerio
(zebrafish)
Length = 75
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgt 49
||||||||||||||||||||||||| |||||
Sbjct: 1 ctatatataccctgtagaaccgaatgtgtgt 31
>RF00104;mir-10;BX005254.9/84183-84108 7955:Danio rerio
(zebrafish)
Length = 76
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgt 49
|||||| ||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;EU025715.1/118732-118806 8030:Salmo salar
(Atlantic salmon)
Length = 75
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgt 49
|||||| ||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgt 49
|||||||||||||||||| ||||||||||||
Sbjct: 1 ctatatataccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 22 tatataccctgtagaaccgaatttgtgt 49
||||||||||||||| ||||||||||||
Sbjct: 4 tatataccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgtg 50
|||||| ||||||||||| |||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgtg 32
>RF00104;mir-10;AAWZ01028329.1/91871-91943 28377:Anolis
carolinensis (green anole)
Length = 73
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 20 tatatataccctgtagaaccgaatttgtgtg 50
||||| |||||||||||| ||||||||||||
Sbjct: 2 tatatgtaccctgtagaatcgaatttgtgtg 32
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 19 ctatatataccctgtagaaccgaatttgtgt 49
|||||| ||||||||||| ||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgt 31
>RF00104;mir-10;FJ356145.1/1191-1265 8022:Oncorhynchus mykiss
(rainbow trout)
Length = 75
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 accctgtagaaccgaatttgtgt 49
|||||||||||||||||||||||
Sbjct: 9 accctgtagaaccgaatttgtgt 31
>RF00104;mir-10;BAAE01206467.1/1361-1287 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 25 ataccctgtagaaccgaatttgtgtgg 51
||||||||||||||||||| |||||||
Sbjct: 7 ataccctgtagaaccgaatgtgtgtgg 33
