miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00455;mir-15;AADN02005381.1/19629-19713 9031:Gallus gallus
          (chicken)
          Length = 85

 Score =  133 bits (67), Expect = 4e-31
 Identities = 70/71 (98%)
 Strand = Plus / Plus

                                                                      
Query: 13 gtagcagcacataatggtttgtggattttgaaaaggtgcaggccatattgtgctgcctca 72
          |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 14 gtagcagcacataatggtttgtgggttttgaaaaggtgcaggccatattgtgctgcctca 73

                     
Query: 73 aaaatacaagg 83
          |||||||||||
Sbjct: 74 aaaatacaagg 84




>RF00455;mir-15;ABRP01194837.1/2584-2662 132908:Pteropus vampyrus
          (large flying fox)
          Length = 79

 Score = 85.7 bits (43), Expect = 8e-17
 Identities = 67/73 (91%), Gaps = 4/73 (5%)
 Strand = Plus / Plus

                                                                      
Query: 11 aagtagcagcacataatggtttgtggattttgaaaaggtgcaggccatattgtgctgcct 70
          ||||||||||||||||||  ||||||||||   |||||||||||||||||||||||||||
Sbjct: 10 aagtagcagcacataatg--ttgtggatttg--aaaggtgcaggccatattgtgctgcct 65

                       
Query: 71 caaaaatacaagg 83
          ||||||| |||||
Sbjct: 66 caaaaatgcaagg 78




>RF00455;mir-15;AAVX01075355.1/1195-1112 7868:Callorhinchus milii
          (ghost shark)
          Length = 84

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 13 gtagcagcacataatggtttgtg 35
          |||||||||||||||||||||||
Sbjct: 14 gtagcagcacataatggtttgtg 36