miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00455;mir-15;AAYZ01325292.1/263-348 9978:Ochotona princeps
          (American pika)
          Length = 86

 Score =  139 bits (70), Expect = 8e-33
 Identities = 82/86 (95%)
 Strand = Plus / Plus

                                                                      
Query: 6  gccttaaagtactgtagcagcacatcatggtttacatactacagtcaagatgcgaatcat 65
          |||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||
Sbjct: 1  gccttaaagtactgtagcagcacatcatggtttacataatatagtcaatatgcgaatcat 60

                                    
Query: 66 tatttgctgctctagaaatttaagga 91
           |||||||||||||||||||||||||
Sbjct: 61 aatttgctgctctagaaatttaagga 86




>RF00455;mir-15;AADN02021066.1/63906-63821 9031:Gallus gallus
          (chicken)
          Length = 86

 Score =  115 bits (58), Expect = 1e-25
 Identities = 79/86 (91%)
 Strand = Plus / Plus

                                                                      
Query: 6  gccttaaagtactgtagcagcacatcatggtttacatactacagtcaagatgcgaatcat 65
          ||||||||||||| ||||||||||||||||||| ||| ||  ||| ||||||||||||||
Sbjct: 1  gccttaaagtactctagcagcacatcatggtttgcatgctgtagtgaagatgcgaatcat 60

                                    
Query: 66 tatttgctgctctagaaatttaagga 91
          ||||||||||| ||||||||||||||
Sbjct: 61 tatttgctgctttagaaatttaagga 86




>RF00455;mir-15;AAPN01094471.1/3183-3268 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 86

 Score = 95.6 bits (48), Expect = 1e-19
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                      
Query: 20 tagcagcacatcatggtttacatactacagtcaagatgcgaatcattatttgctgctcta 79
          ||||||||||||||||||| |||  || || |||||||||||||||||||||||||| ||
Sbjct: 15 tagcagcacatcatggtttgcatggtatagccaagatgcgaatcattatttgctgcttta 74

                      
Query: 80 gaaatttaagga 91
          ||||||||||||
Sbjct: 75 gaaatttaagga 86




>RF00455;mir-15;AAFR03046999.1/49599-49513 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 87

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 56 tgcgaatcattatttgctgctctagaaatttaagg 90
          ||||||||||||||||||||| |||||||||||||
Sbjct: 52 tgcgaatcattatttgctgctttagaaatttaagg 86




>RF00455;mir-15;AAWZ01001750.1/5603-5688 28377:Anolis carolinensis
          (green anole)
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                      
Query: 9  ttaaagtactgtagcagcacatcatggtttacatactacagtcaagatgcgaatcattat 68
          |||||||||| ||||||||||||||| |||  ||   | ||| || |||| | |||||||
Sbjct: 4  ttaaagtactctagcagcacatcatgatttgtatgtcatagtaaatatgcaagtcattat 63

                              
Query: 69 ttgctgctctagaaatttaa 88
          |||||||| ||||| |||||
Sbjct: 64 ttgctgctttagaattttaa 83




>RF00455;mir-15;AANH01002998.1/16865-16950 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 56 tgcgaatcattatttgctgctctagaaatttaagga 91
          |||||| |||||||||||||| ||||| ||||||||
Sbjct: 51 tgcgaaccattatttgctgctttagaattttaagga 86




>RF00455;mir-15;BAAF04019869.1/1029-1115 8090:Oryzias latipes
          (Japanese medaka)
          Length = 87

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 56 tgcgaatcattatttgctgctctagaaatttaagga 91
          |||||| |||||||||||||| ||||| ||||||||
Sbjct: 52 tgcgaaccattatttgctgctttagaattttaagga 87




>RF00455;mir-15;ABQF01022934.1/39859-39944 59729:Taeniopygia
          guttata
          Length = 86

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 12 aagtactgtagcagcacatcatggttt 38
          |||| ||||||||||||||||||||||
Sbjct: 7  aagtgctgtagcagcacatcatggttt 33




>RF00455;mir-15;CT027989.8/7473-7560 7955:Danio rerio (zebrafish)
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 17 ctgtagcagcacatcatggttt 38
          ||||||||||||||||||||||
Sbjct: 12 ctgtagcagcacatcatggttt 33




>RF00455;mir-15;AAVX01576111.1/286-371 7868:Callorhinchus milii
          (ghost shark)
          Length = 86

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 17 ctgtagcagcacatcatggttt 38
          ||||||||||||||||||||||
Sbjct: 12 ctgtagcagcacatcatggttt 33