miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;AAHX01085677.1/1620-1701 10116:Rattus norvegicus
(Norway rat)
Length = 82
Score = 117 bits (59), Expect = 2e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 2 tcagaataatgtcaaagtgcttacagtgcaggtagtgatatgtgcatctactgcagtgaa 61
|||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1 tcaggataatgtcaaagtgcttacagtgcaggtagtggtgtgtgcatctactgcagtgaa 60
Query: 62 ggcacttgtagcatt 76
||||||||| |||||
Sbjct: 61 ggcacttgtggcatt 75
>RF00051;mir-17;AADN02029366.1/35604-35522 9031:Gallus gallus
(chicken)
Length = 83
Score = 109 bits (55), Expect = 6e-24
Identities = 74/79 (93%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 2 tcagaataatgtcaaagtgcttacagtgcaggtagtgatatgt-gcatctactgcagtga 60
||||| ||||||||||||||||||||||||||||||||||| | | | ||||||||||||
Sbjct: 1 tcagagtaatgtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtga 60
Query: 61 aggcacttgtagcattatg 79
|||||||||||||||||||
Sbjct: 61 aggcacttgtagcattatg 79
>RF00051;mir-17;AAVX01531971.1/673-753 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 69.9 bits (35), Expect = 5e-12
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 8 taatgtcaaagtgcttacagtgcaggtagtgatatgtgcatctactgcagtgaaggcact 67
||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 7 taatgtcaaagtgcttacagtgcaggtagtg-tcttaaaatctactgcagtgaaggcact 65
Query: 68 tgtagcattat 78
| ||||||||
Sbjct: 66 tcaagcattat 76
>RF00051;mir-17;CAAB01000095.1/5425-5345 31033:Takifugu rubripes
Length = 81
Score = 67.9 bits (34), Expect = 2e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagtgatatgtgcatctactgcagtgaaggcactt 68
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagtttgatg-acatctactgcagtgaaggcactt 66
>RF00051;mir-17;AAPN01282049.1/1442-1526 9258:Ornithorhynchus
anatinus (platypus)
Length = 85
Score = 60.0 bits (30), Expect = 5e-09
Identities = 67/77 (87%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 3 cagaataatgtcaaagtgcttacagtgcagg--tagtgatatgt-gcatctactgcagtg 59
||||||||||||||||| ||| |||||||| ||||| |||| | |||| ||||||||
Sbjct: 2 cagaataatgtcaaagtatttaaagtgcaggggtagtggcatgtagaatctgctgcagtg 61
Query: 60 aaggcacttgtagcatt 76
|||||||||||||||||
Sbjct: 62 aaggcacttgtagcatt 78
>RF00051;mir-17;AANH01005312.1/96166-96086 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 60.0 bits (30), Expect = 5e-09
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagtgatatgtgcatctactgcagtgaaggcactt 68
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagttttat-caaatctactgcagtgaaggcactt 66
>RF00051;mir-17;BAAF04019480.1/14298-14217 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 60.0 bits (30), Expect = 5e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagtgatatgtgcatctactgcagtgaaggcactt 68
||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagttttctaaaaatctactgcagtgaaggcactt 67
>RF00051;mir-17;CAAK05029381.1/11768-11850 7955:Danio rerio
(zebrafish)
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagtgatat-gtgcatctactgcagtgaaggcacttg 69
||||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagtattatggaatatctactgcagtggaggcacttc 69
Query: 70 tagca 74
|||||
Sbjct: 70 tagca 74
>RF00051;mir-17;CAAB01003114.1/25632-25550 31033:Takifugu rubripes
Length = 83
Score = 56.0 bits (28), Expect = 7e-08
Identities = 50/56 (89%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 14 caaagtgcttacagtgcaggtagtgatatgtg-catctactgcagtgaaggcactt 68
|||||||||||||||||||||||| |||||| || |||||||| || ||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagttctatgtgacacctactgcaatggaggcactt 68
>RF00051;mir-17;CAAK05051440.1/16292-16212 7955:Danio rerio
(zebrafish)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AANH01000396.1/151542-151460 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;BAAF04006740.1/10494-10412 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;ABPJ01055347.1/275-359 35575:Mchenga conophoros
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagtgat 40
||||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtgat 39
>RF00051;mir-17;BAAF04070900.1/19468-19386 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagtgat 40
||||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtgat 39
>RF00051;mir-17;CAAE01014998.1/174612-174696 99883:Tetraodon
nigroviridis
Length = 85
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagtga 39
|||||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagtga 38
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 atgtcaaagtgcttacagtgcaggtagt 37
|||| |||||||||||||||||||||||
Sbjct: 9 atgtaaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AAPN01018584.1/1527-1606 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AAWZ01041387.1/1182-1261 28377:Anolis carolinensis
(green anole)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagtgatatgtgcatctactgcagtgaaggcactt 68
|||||||||| ||||||||||||| | | ||||||||||||||| |||||||
Sbjct: 14 aaagtgcttatagtgcaggtagtg-tgttggcatctactgcagtgttggcactt 66
>RF00051;mir-17;ABQF01018395.1/1087-1166 59729:Taeniopygia guttata
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AADN02013295.1/455-376 9031:Gallus gallus
(chicken)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
