miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;AADN02029366.1/35306-35235 9031:Gallus gallus
          (chicken)
          Length = 72

 Score =  141 bits (71), Expect = 2e-33
 Identities = 71/71 (100%)
 Strand = Plus / Plus

                                                                      
Query: 8  tctgttagttttgcatagttgcactacaggaagaatgtagttgtgcaaatctatgcaaaa 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tctgttagttttgcatagttgcactacaggaagaatgtagttgtgcaaatctatgcaaaa 61

                     
Query: 68 ctgatggtggc 78
          |||||||||||
Sbjct: 62 ctgatggtggc 72




>RF00245;mir-19;BAAF04006740.1/10225-10154 8090:Oryzias latipes
          (Japanese medaka)
          Length = 72

 Score = 89.7 bits (45), Expect = 5e-18
 Identities = 68/73 (93%), Gaps = 2/73 (2%)
 Strand = Plus / Plus

                                                                      
Query: 7  ctctgttagttttgcatagttgcactacaggaaga-atgtagttgtgcaaatctatgcaa 65
          ||||| ||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||
Sbjct: 1  ctctgctagttttgcatagttgcactacaagaatagatg-agttgtgcaaatctatgcaa 59

                       
Query: 66 aactgatggtggc 78
          |||||||||||||
Sbjct: 60 aactgatggtggc 72




>RF00245;mir-19;BAAE01210639.1/2145-2074 8090:Oryzias latipes
          (Japanese medaka)
          Length = 72

 Score = 73.8 bits (37), Expect = 3e-13
 Identities = 66/73 (90%), Gaps = 2/73 (2%)
 Strand = Plus / Plus

                                                                      
Query: 7  ctctgttagttttgcatagttgcactacaggaaga-atgtagttgtgcaaatctatgcaa 65
          |||||||||||||||||||||||||| || ||||| |||  |||||||||||||||||||
Sbjct: 1  ctctgttagttttgcatagttgcactgcaagaagagatg-cgttgtgcaaatctatgcaa 59

                       
Query: 66 aactgatggtggc 78
          | ||||| |||||
Sbjct: 60 agctgatagtggc 72




>RF00245;mir-19;ABPJ01018453.1/307-378 35575:Mchenga conophoros
          Length = 72

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                      
Query: 11 gttagttttgcatagttgcactacaggaagaatgtagttgtgcaaatctatgcaaaactg 70
          ||||||||||| ||||||| || || ||||||   |||||||||||||||||||||||||
Sbjct: 5  gttagttttgcgtagttgcgctgcaagaagaaataagttgtgcaaatctatgcaaaactg 64

                  
Query: 71 atggtggc 78
          | ||||||
Sbjct: 65 acggtggc 72




>RF00245;mir-19;AAPN01106467.1/17825-17895 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 71

 Score = 69.9 bits (35), Expect = 5e-12
 Identities = 48/51 (94%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                             
Query: 21 catagttgcactacaggaagaatgtagttgtgcaaatctatgcaaaactga 71
          |||| |||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 15 cataattgcactacaagaagaatgtagt-gtgcaaatctatgcaaaactga 64




>RF00245;mir-19;AAPN01215107.1/7965-8033 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 69

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 57/66 (86%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                      
Query: 7  ctctgttagttttgcatagttgcactacaggaagaatgtagttgtgcaaatctatgcaaa 66
          |||| ||||||| |||||||||||| |   |||||||||||||| | |||||||| ||||
Sbjct: 1  ctctattagtttagcatagttgcacaa---gaagaatgtagttgcgtaaatctatacaaa 57

                
Query: 67 actgat 72
          ||||||
Sbjct: 58 actgat 63




>RF00245;mir-19;AAPN01282049.1/2127-2189 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 63

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 47 gttgtgcaaatctatgcaaaactga 71
          |||||||||||||||||||||||||
Sbjct: 32 gttgtgcaaatctatgcaaaactga 56




>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
          (zebrafish)
          Length = 76

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 49 tgtgcaaatctatgcaaaactgatggtggc 78
          |||||||||| ||||||||||||| |||||
Sbjct: 47 tgtgcaaatccatgcaaaactgattgtggc 76