miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;CR390304.1/227-301 9031:Gallus gallus (chicken)
Length = 75
Score = 127 bits (64), Expect = 2e-29
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 11 tggttagttttgcaggtttgcatccagctgtgtgatattctgctgtgcaaatccatgcaa 70
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 3 tggttagttttgcaggtttgcatccagctgtatgatactctgctgtgcaaatccatgcaa 62
Query: 71 aactgactgtgg 82
||||||||||||
Sbjct: 63 aactgactgtgg 74
>RF00245;mir-19;ABRR01417027.1/645-719 30538:Lama pacos (alpaca)
Length = 75
Score = 111 bits (56), Expect = 1e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 12 ggttagttttgcaggtttgcatccagctgtgtgatattctgctgtgcaaatccatgcaaa 71
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 4 ggttagttttgcaggtttgtctccagctgtgtgatattctgctgtgcaaatccaggcaac 63
Query: 72 actgactgtggt 83
||||||||||||
Sbjct: 64 actgactgtggt 75
>RF00245;mir-19;AAPN01121175.1/4459-4405 9258:Ornithorhynchus
anatinus (platypus)
Length = 55
Score = 83.8 bits (42), Expect = 3e-16
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 19 tttgcaggtttgcatccagctgtgtgatattctgctgtgcaaatcc 64
|||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tttgcaggtttgcatccagctgtgtggtattctgctgtgcaaatcc 46
>RF00245;mir-19;ABRO01215612.1/2554-2625 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 79.8 bits (40), Expect = 5e-15
Identities = 53/56 (94%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 28 ttgcatccagctgtgtgatattctgctgtgcaaatccatgcaaaactgactgtggt 83
||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||
Sbjct: 18 ttgcatccagctgtgtgatct-ctgctgtgcaaatccatgcaaaactgaatgtggt 72
>RF00245;mir-19;ABQF01018395.1/1563-1636 59729:Taeniopygia guttata
Length = 74
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 51 tgctgtgcaaatccatgcaaaactgactgtggt 83
|||||||||||||||||||||||||||||||||
Sbjct: 42 tgctgtgcaaatccatgcaaaactgactgtggt 74
>RF00245;mir-19;AALT01065661.1/586-507 42254:Sorex araneus
(European shrew)
Length = 80
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtg 81
||||||||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgactgtg 78
>RF00245;mir-19;BAAF04019480.1/13479-13405 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 60.0 bits (30), Expect = 5e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 11 tggttagttttgcaggtttgcatccagctgtgtgatattctgctgtgcaaatccatgcaa 70
||||||||||||| ||||||| | ||||| | || | |||||||||||||||||||||
Sbjct: 3 tggttagttttgctggtttgctttcagcttttcaatctactgctgtgcaaatccatgcaa 62
Query: 71 aactga 76
||||||
Sbjct: 63 aactga 68
>RF00245;mir-19;AAPN01215107.1/8247-8320 9258:Ornithorhynchus
anatinus (platypus)
Length = 74
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 15 tagttttgcaggtttgcatccagctgtgtgatattctgctgtgcaaatccatgcaaaact 74
|||||||||||||| |||||||||||| || || ||||| |||||| |||||||||||
Sbjct: 7 tagttttgcaggttggcatccagctgtatggtactctgccaagcaaat-catgcaaaact 65
Query: 75 gactg 79
|||||
Sbjct: 66 gactg 70
>RF00245;mir-19;CAAE01014581.1/3627391-3627319 99883:Tetraodon
nigroviridis
Length = 73
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 11 tggttagttttgcaggtttgcatccagctgtgtgatattctgctgtgcaaatccatgcaa 70
|||| |||||||| ||||||||| ||||| ||| | | ||||||||||||||||||||
Sbjct: 3 tggtcagttttgctggtttgcattcagctttgt--tgctgtgctgtgcaaatccatgcaa 60
Query: 71 aactgact 78
||||||||
Sbjct: 61 aactgact 68
>RF00245;mir-19;CAAB01003114.1/25012-24940 31033:Takifugu rubripes
Length = 73
Score = 56.0 bits (28), Expect = 8e-08
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 11 tggttagttttgcaggtttgcatccagctgtgtgatattctgctgtgcaaatccatgcaa 70
|||| |||||||| ||||||||||||||| ||| || |||||||||||||||||||
Sbjct: 3 tggtcagttttgctggtttgcatccagctttgt--taccgcgctgtgcaaatccatgcaa 60
Query: 71 aactgac 77
|||||||
Sbjct: 61 aactgac 67
>RF00245;mir-19;CAAA01011593.1/1296-1217 10090:Mus musculus (house
mouse)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtgg 82
||||||||||||||||||||||||| |||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgattgtgg 79
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtgg 82
||||||||||||||||||||||||| |||||
Sbjct: 45 gctgtgcaaatccatgcaaaactgattgtgg 75
>RF00245;mir-19;BAAF04006740.1/9884-9810 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 tgctgtgcaaatccatgcaaaactgac 77
|||||||||||||||||||||||||||
Sbjct: 44 tgctgtgcaaatccatgcaaaactgac 70
>RF00245;mir-19;AAFR03056382.1/2211-2283 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 tgctgtgcaaatccatgcaaaactga 76
||||||||||||||||||||||||||
Sbjct: 41 tgctgtgcaaatccatgcaaaactga 66
>RF00245;mir-19;AAGV020837897.1/862-786 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtg 81
||||||||||||||||||||||||| ||||
Sbjct: 46 gctgtgcaaatccatgcaaaactgattgtg 75
>RF00245;mir-19;AAEX02004024.1/8061-8140 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgac 77
||||||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgac 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ggttagttttgcaggtttgcat 33
||||||||||||||||||||||
Sbjct: 4 ggttagttttgcaggtttgcat 25
>RF00245;mir-19;AAQR01356969.1/112-34 30611:Otolemur garnettii
(small-eared galago)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtg 81
||||||||||||||||||||||||| ||||
Sbjct: 48 gctgtgcaaatccatgcaaaactgattgtg 77
>RF00245;mir-19;AADA01312424.1/2142-2221 9598:Pan troglodytes
(chimpanzee)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtg 81
||||||||||||||||||||||||| ||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgattgtg 78
>RF00245;mir-19;AAKN02053349.1/40109-40028 10141:Cavia porcellus
(domestic guinea pig)
Length = 82
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtg 81
||||||||||||||||||||||||| ||||
Sbjct: 51 gctgtgcaaatccatgcaaaactgattgtg 80
>RF00245;mir-19;AAGW01169230.1/2171-2250 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtg 81
||||||||||||||||||||||||| ||||
Sbjct: 49 gctgtgcaaatccatgcaaaactgattgtg 78
>RF00245;mir-19;AAGU02347239.1/371-298 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgac 77
||||||||||||||||||||||||||
Sbjct: 43 gctgtgcaaatccatgcaaaactgac 68
>RF00245;mir-19;ABRQ01318667.1/1139-1062 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgactgtg 81
||||||||||||||||||||||||| ||||
Sbjct: 47 gctgtgcaaatccatgcaaaactgattgtg 76
>RF00245;mir-19;CAAK05051440.1/15749-15676 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 tgctgtgcaaatccatgcaaaactga 76
||||||||||||||||||||||||||
Sbjct: 42 tgctgtgcaaatccatgcaaaactga 67
>RF00245;mir-19;AANH01000396.1/150925-150850 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 tgctgtgcaaatccatgcaaaactga 76
||||||||||||||||||||||||||
Sbjct: 44 tgctgtgcaaatccatgcaaaactga 69
>RF00245;mir-19;AAPN01282049.1/2127-2189 9258:Ornithorhynchus
anatinus (platypus)
Length = 63
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 54 tgtgcaaatccatgcaaaactgactgtgg 82
|||||||||| ||||||||||||||||||
Sbjct: 34 tgtgcaaatctatgcaaaactgactgtgg 62
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tggttagttttgcaggtttgcatccag 37
||||||||||| |||||||||||||||
Sbjct: 3 tggttagttttacaggtttgcatccag 29
>RF00245;mir-19;BX511227.7/25216-25142 7955:Danio rerio
(zebrafish)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 tgctgtgcaaatccatgcaaaact 74
||||||||||||||||||||||||
Sbjct: 43 tgctgtgcaaatccatgcaaaact 66
>RF00245;mir-19;AANH01005996.1/21250-21325 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctgctgtgcaaatccatgcaaa 71
|||||||||||||||||||||||
Sbjct: 42 tctgctgtgcaaatccatgcaaa 64
>RF00245;mir-19;BAAE01249018.1/744-824 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgact 78
|||||||||| ||||||||||||||||
Sbjct: 50 gctgtgcaaacccatgcaaaactgact 76
>RF00245;mir-19;AAVX01075480.1/1651-1574 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 53 ctgtgcaaatccatgcaaaactgactg 79
||||||||||||| |||||||||||||
Sbjct: 48 ctgtgcaaatccacgcaaaactgactg 74
>RF00245;mir-19;ABPK01045950.1/308-388 57307:Labeotropheus
fuelleborni
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 gctgtgcaaatccatgcaaaactgac 77
|||||||||| |||||||||||||||
Sbjct: 50 gctgtgcaaacccatgcaaaactgac 75
