miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00245;mir-19;AAGW01169230.1/2171-2250 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 125 bits (63), Expect = 1e-28
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 13 acaattagttttgcaggtttgcatttcagcgtatatatgtatatgtggctgtgcaaatcc 72
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 2 acaattagttttgcaggtttgcatttcagcgtatacctgtatacatggctgtgcaaatcc 61
Query: 73 atgcaaaactgattgtgat 91
|||||||||||||||||||
Sbjct: 62 atgcaaaactgattgtgat 80
>RF00245;mir-19;AADA01312424.1/2142-2221 9598:Pan troglodytes
(chimpanzee)
Length = 80
Score = 113 bits (57), Expect = 4e-25
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 15 aattagttttgcaggtttgcatttcagcgtatatatgtatatgtggctgtgcaaatccat 74
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 4 aattagttttgcaggtttgcatttcagcgtatatataaaggggtggctgtgcaaatccat 63
Query: 75 gcaaaactgattgtgat 91
|||||||||||||||||
Sbjct: 64 gcaaaactgattgtgat 80
>RF00245;mir-19;AAQR01356969.1/112-34 30611:Otolemur garnettii
(small-eared galago)
Length = 79
Score = 111 bits (56), Expect = 2e-24
Identities = 72/76 (94%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 16 attagttttgcaggtttgcatttcagcgtatatatgtatatgtggctgtgcaaatccatg 75
||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct: 5 attagttttgcaggtttgcatttcagcgtat-tgtgtatatcaggctgtgcaaatccatg 63
Query: 76 caaaactgattgtgat 91
||||||||||||||||
Sbjct: 64 caaaactgattgtgat 79
>RF00245;mir-19;AAKN02053349.1/40109-40028 10141:Cavia porcellus
(domestic guinea pig)
Length = 82
Score = 109 bits (55), Expect = 7e-24
Identities = 76/82 (92%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 12 tacaattagttttgcaggtttgcatttcagcgtat--atatgtatatgtggctgtgcaaa 69
||||||||||||||||||||||||||||||||||| |||| | || ||||||||||||
Sbjct: 1 tacaattagttttgcaggtttgcatttcagcgtatagatatatctacatggctgtgcaaa 60
Query: 70 tccatgcaaaactgattgtgat 91
||||||||||||||||||||||
Sbjct: 61 tccatgcaaaactgattgtgat 82
>RF00245;mir-19;CAAA01011593.1/1296-1217 10090:Mus musculus (house
mouse)
Length = 80
Score = 107 bits (54), Expect = 3e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 16 attagttttgcaggtttgcatttcagcgtatatatgtatatgtggctgtgcaaatccatg 75
||||||||||||| |||||| |||||||||||| || |||| ||||||||||||||||||
Sbjct: 5 attagttttgcagatttgcagttcagcgtatatgtgaatatatggctgtgcaaatccatg 64
Query: 76 caaaactgattgtg 89
||||||||||||||
Sbjct: 65 caaaactgattgtg 78
>RF00245;mir-19;AALT01065661.1/586-507 42254:Sorex araneus
(European shrew)
Length = 80
Score = 93.7 bits (47), Expect = 4e-19
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 17 ttagttttgcaggtttgcatttcagcgtatatatgtatatgtggctgtgcaaatccatgc 76
||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 6 ttagttttgcaggtttgcatttcagcgtatataaatctacagggctgtgcaaatccatgc 65
Query: 77 aaaactgattgtgat 91
|||||||| ||||||
Sbjct: 66 aaaactgactgtgat 80
>RF00245;mir-19;ABRQ01318667.1/1139-1062 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 91.7 bits (46), Expect = 2e-18
Identities = 67/73 (91%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 19 agttttgcaggtttgcatttcagcgtatatatgtatatgtggctgtgcaaatccatgcaa 78
|||||||||||||||||||||||| || ||| ||| | |||||||||||||||||||||
Sbjct: 8 agttttgcaggtttgcatttcagc--atgtatttatgtatggctgtgcaaatccatgcaa 65
Query: 79 aactgattgtgat 91
|||||||||||||
Sbjct: 66 aactgattgtgat 78
>RF00245;mir-19;AAEX02004024.1/8061-8140 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 17 ttagttttgcaggtttgcatttcagcgtatatatgtatatgtggctgtgcaaatccatgc 76
||||||||||||||||||||||||||||| | || |||| ||||||||||||||||||
Sbjct: 6 ttagttttgcaggtttgcatttcagcgtacttgtgcatatagggctgtgcaaatccatgc 65
Query: 77 aaaactga 84
||||||||
Sbjct: 66 aaaactga 73
>RF00245;mir-19;AAGV020837897.1/862-786 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 77
Score = 75.8 bits (38), Expect = 9e-14
Identities = 70/80 (87%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 12 tacaattagttttgcaggtttgcatttcagcgtatatatgtatatgtggctgtgcaaatc 71
|||| |||||||||||||||||||||||||| || | || || |||||||||||||
Sbjct: 1 tacagttagttttgcaggtttgcatttcagcatacacata---atacggctgtgcaaatc 57
Query: 72 catgcaaaactgattgtgat 91
||||||||||||||||||||
Sbjct: 58 catgcaaaactgattgtgat 77
>RF00245;mir-19;AAGU02347239.1/371-298 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 73.8 bits (37), Expect = 4e-13
Identities = 65/73 (89%), Gaps = 6/73 (8%)
Strand = Plus / Plus
Query: 12 tacaattagttttgcaggtttgcatttcagcgtatatatgtatatgtggctgtgcaaatc 71
|||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||||
Sbjct: 1 tacagttagttttgcaggtttgcattgcag----tatatgtatatg--gctgtgcaaatc 54
Query: 72 catgcaaaactga 84
|||||||||||||
Sbjct: 55 catgcaaaactga 67
>RF00245;mir-19;CAAK05029381.1/12427-12502 7955:Danio rerio
(zebrafish)
Length = 76
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgattgtg 89
||||||||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactgattgtg 74
>RF00245;mir-19;AAFR03056382.1/2211-2283 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgatt 86
|||||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactgatt 68
>RF00245;mir-19;AANH01000396.1/150925-150850 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgatt 86
|||||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactgatt 71
>RF00245;mir-19;ABRO01215612.1/2554-2625 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgattgtg 89
||||||||||||||||||||||||| ||||
Sbjct: 41 gctgtgcaaatccatgcaaaactgaatgtg 70
>RF00245;mir-19;ABQF01018395.1/1563-1636 59729:Taeniopygia guttata
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgattgtg 89
||||||||||||||||||||||||| ||||
Sbjct: 43 gctgtgcaaatccatgcaaaactgactgtg 72
>RF00245;mir-19;CR390304.1/227-301 9031:Gallus gallus (chicken)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgattgtg 89
||||||||||||||||||||||||| ||||
Sbjct: 44 gctgtgcaaatccatgcaaaactgactgtg 73
>RF00245;mir-19;CAAK05051440.1/15749-15676 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgat 85
||||||||||||||||||||||||||
Sbjct: 43 gctgtgcaaatccatgcaaaactgat 68
>RF00245;mir-19;BAAF04019480.1/13479-13405 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactgat 85
||||||||||||||||||||||||||
Sbjct: 44 gctgtgcaaatccatgcaaaactgat 69
>RF00245;mir-19;CAAE01014581.1/3627391-3627319 99883:Tetraodon
nigroviridis
Length = 73
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactga 84
|||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactga 66
>RF00245;mir-19;CAAB01003114.1/25012-24940 31033:Takifugu rubripes
Length = 73
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactga 84
|||||||||||||||||||||||||
Sbjct: 42 gctgtgcaaatccatgcaaaactga 66
>RF00245;mir-19;BAAF04006740.1/9884-9810 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaactga 84
|||||||||||||||||||||||||
Sbjct: 45 gctgtgcaaatccatgcaaaactga 69
>RF00245;mir-19;BX511227.7/25216-25142 7955:Danio rerio
(zebrafish)
Length = 75
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 gctgtgcaaatccatgcaaaact 82
|||||||||||||||||||||||
Sbjct: 44 gctgtgcaaatccatgcaaaact 66
