miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;ABRQ01065900.1/2710-2791 9813:Procavia capensis
          (cape rock hyrax)
          Length = 82

 Score =  139 bits (70), Expect = 6e-33
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctgaggagcagggcttagctgcttgtgagcagggtccacaccaagtcgtgttcacagtgg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5  ctgaggagcagggcttagctgcttgtgagcagggtccacaccaagtcgtgttcacagtgg 64

                    
Query: 61 ctaagttccg 70
          ||||||||||
Sbjct: 65 ctaagttccg 74




>RF00644;mir-27;AAPY01721327.1/686-605 37347:Tupaia belangeri
          (northern tree shrew)
          Length = 82

 Score = 95.6 bits (48), Expect = 8e-20
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctgaggagcagggcttagctgcttgtgagcagggtccacaccaagtcgtgttcacagtgg 60
          |||||||||||||||||||||||||||||||| ||||||||||||  ||| |||||||||
Sbjct: 5  ctgaggagcagggcttagctgcttgtgagcagcgtccacaccaagctgtgctcacagtgg 64

                  
Query: 61 ctaagttc 68
          ||| ||||
Sbjct: 65 ctacgttc 72




>RF00644;mir-27;AANN01357153.1/1239-1159 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 81

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 59/66 (89%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 5  ggagcagggcttagctgcttgtgagcagggtccacaccaagtcgtgttcacagtggctaa 64
          ||||||||||||||||||| |||| ||||||   |||| |||| ||||||||||||||||
Sbjct: 9  ggagcagggcttagctgctggtgaacagggtgt-caccgagtcttgttcacagtggctaa 67

                
Query: 65 gttccg 70
          ||||||
Sbjct: 68 gttccg 73




>RF00644;mir-27;AAFR03052006.1/45216-45298 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 83

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 60/70 (85%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  tgaggagcagggcttagctgc-ttgtgagcagggtccacaccaagtcgtgttcacagtgg 60
          ||||||||||| ||||||||| |||||| ||| |||  || ||  | |||||||||||||
Sbjct: 6  tgaggagcaggacttagctgccttgtgaacagagtcagcatcatattgtgttcacagtgg 65

                    
Query: 61 ctaagttccg 70
          ||||||||||
Sbjct: 66 ctaagttccg 75




>RF00644;mir-27;ABRO01400204.1/542-621 10020:Dipodomys ordii
          (Ord's kangaroo rat)
          Length = 80

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 3  gaggagcagggcttagctgcttgtgagcagggt 35
          |||||||||||||||||  ||||||||||||||
Sbjct: 7  gaggagcagggcttagccacttgtgagcagggt 39




>RF00644;mir-27;BAAE01159437.1/1557-1475 8090:Oryzias latipes
          (Japanese medaka)
          Length = 83

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 46 tcgtgttcacagtggctaagttccg 70
          |||||||||||||||||||||||||
Sbjct: 51 tcgtgttcacagtggctaagttccg 75




>RF00644;mir-27;AAPN01322484.1/470-549 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 80

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 cgtgttcacagtggctaagttccg 70
          ||||||||||||||||||||||||
Sbjct: 49 cgtgttcacagtggctaagttccg 72




>RF00644;mir-27;CAAB01002712.1/1229-1146 31033:Takifugu rubripes
          Length = 84

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 48 gtgttcacagtggctaagttccg 70
          |||||||||||||||||||||||
Sbjct: 54 gtgttcacagtggctaagttccg 76




>RF00644;mir-27;ABPM01053951.1/750-668 106582:Maylandia zebra
          (zebra mbuna)
          Length = 83

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 48 gtgttcacagtggctaagttccg 70
          |||||||||||||||||||||||
Sbjct: 53 gtgttcacagtggctaagttccg 75




>RF00644;mir-27;AANH01005378.1/81241-81159 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 83

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 48 gtgttcacagtggctaagttccg 70
          |||||||||||||||||||||||
Sbjct: 53 gtgttcacagtggctaagttccg 75




>RF00644;mir-27;AAWZ01000886.1/15608-15527 28377:Anolis
          carolinensis (green anole)
          Length = 82

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 49 tgttcacagtggctaagttccg 70
          ||||||||||||||||||||||
Sbjct: 53 tgttcacagtggctaagttccg 74




>RF00644;mir-27;BX664751.9/57144-57062 7955:Danio rerio
          (zebrafish)
          Length = 83

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 49 tgttcacagtggctaagttccg 70
          ||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttccg 75




>RF00644;mir-27;AAVX01257813.1/610-525 7868:Callorhinchus milii
          (ghost shark)
          Length = 86

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 49 tgttcacagtggctaagttccg 70
          ||||||||||||||||||||||
Sbjct: 57 tgttcacagtggctaagttccg 78