miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00131;mir-30;ABRQ01189397.1/6501-6442 9813:Procavia capensis
(cape rock hyrax)
Length = 60
Score = 95.6 bits (48), Expect = 7e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 6 tgtaaacatccccgactggaagctgtaagacacagctaagctttcagtcagatgtttgct 65
||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtacgacagagctaagctttcagtccgatgtttgct 60
>RF00131;mir-30;AAYZ01122954.1/1089-1030 9978:Ochotona princeps
(American pika)
Length = 60
Score = 93.7 bits (47), Expect = 3e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 6 tgtaaacatccccgactggaagctgtaagacacagctaagctttcagtcagatgtttgc 64
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtaagaagcggctaagctttcagtcagatgtttgc 59
>RF00131;mir-30;AAPN01319291.1/18051-18110 9258:Ornithorhynchus
anatinus (platypus)
Length = 60
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 6 tgtaaacatccccgactggaagctgtaagacacagctaagctttcagtcagatgtttgct 65
|||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtaaaataccttcaagctttcagtcagatgtttgct 60
>RF00131;mir-30;AAVX01365666.1/262-201 7868:Callorhinchus milii
(ghost shark)
Length = 62
Score = 65.9 bits (33), Expect = 6e-11
Identities = 56/61 (91%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 6 tgtaaacatccccgactggaagctgtaagaca-cagct-aagctttcagtcagatgtttg 63
|||||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgtaaaacagcagctccagctttcagtccgatgtttg 60
Query: 64 c 64
|
Sbjct: 61 c 61
>RF00131;mir-30;ABRQ01009475.1/3495-3435 9813:Procavia capensis
(cape rock hyrax)
Length = 61
Score = 56.0 bits (28), Expect = 6e-08
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 6 tgtaaacatccccgactggaagctgt-aagacacagctaagctttcagtcagatgtttgc 64
||||||||||| |||||||||||||| ||| ||||| | |||||||||| |||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtgaagccacagatgggctttcagtcggatgtttgc 60
>RF00131;mir-30;AADN02022374.1/21255-21311 9031:Gallus gallus
(chicken)
Length = 57
Score = 56.0 bits (28), Expect = 6e-08
Identities = 54/61 (88%), Gaps = 5/61 (8%)
Strand = Plus / Plus
Query: 6 tgtaaacatccccgactggaagctgtaagacacagc-taagctttcagtcagatgtttgc 64
||||||||||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgta----gcagcttgagctttcagtcagatgtttgc 56
Query: 65 t 65
|
Sbjct: 57 t 57
>RF00131;mir-30;ABQF01032194.1/21176-21232 59729:Taeniopygia
guttata
Length = 57
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 tgtaaacatccccgactggaagctgta 32
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgta 27
>RF00131;mir-30;BX323874.4/7995-7933 7955:Danio rerio (zebrafish)
Length = 63
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 tgtaaacatccccgactggaagctgt 31
||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;CAAB01000020.1/215834-215777 31033:Takifugu
rubripes
Length = 58
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 tgtaaacatccccgactggaagctgt 31
||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;AANH01002465.1/73021-72964 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 58
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 tgtaaacatccccgactggaagctgt 31
||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;BAAF04077266.1/8695-8638 8090:Oryzias latipes
(Japanese medaka)
Length = 58
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 tgtaaacatccccgactggaagctgt 31
||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgt 26
>RF00131;mir-30;ABRT010169987.1/2049-1991 9478:Tarsius syrichta
(Philippine tarsier)
Length = 59
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatccccgactggaagctgt 31
||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgt 26
>RF00131;mir-30;AADN02002528.1/88445-88506 9031:Gallus gallus
(chicken)
Length = 62
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatccccgactggaagctgt 31
||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgt 26
>RF00131;mir-30;AAVX01474940.1/155-214 7868:Callorhinchus milii
(ghost shark)
Length = 60
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tgtaaacatccccgactggaagctgt 31
||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgt 26
