miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00667;mir-33;AAYZ01156209.1/2544-2612 9978:Ochotona princeps
(American pika)
Length = 69
Score = 103 bits (52), Expect = 3e-22
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 1 ctgcggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagt 60
|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct: 1 ctgcggtgcattgtagttgcattgcatgttctggcggtaaccgtgcaatgtttccacagt 60
Query: 61 gcat 64
||||
Sbjct: 61 gcat 64
>RF00667;mir-33;ABRP01241176.1/6014-5945 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 91.7 bits (46), Expect = 1e-18
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgttc-tggtggtacccatgcaatgtttccacagtgca 63
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgtttatggtggtacccatgcagtgtttccacagtgca 64
Query: 64 ttacag 69
| ||||
Sbjct: 65 tcacag 70
>RF00667;mir-33;AC105358.8/20002-19934 10090:Mus musculus (house
mouse)
Length = 69
Score = 79.8 bits (40), Expect = 4e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcat 64
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgttctggcaatacctgtgcaatgtttccacagtgcat 64
>RF00667;mir-33;AAPY01023874.1/2160-2093 37347:Tupaia belangeri
(northern tree shrew)
Length = 68
Score = 73.8 bits (37), Expect = 2e-13
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 ctgcggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagt 60
|||| |||||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct: 1 ctgcagtgcattgtagttgcattgcatgtcctgacagta-ccatgcaatgtttccacagt 59
Query: 61 gcattacag 69
|||| ||||
Sbjct: 60 gcatcacag 68
>RF00667;mir-33;AAPN01437665.1/3526-3458 9258:Ornithorhynchus
anatinus (platypus)
Length = 69
Score = 63.9 bits (32), Expect = 2e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcatt 65
||||||||||||||||||||| |||| || |||| ||||||||| ||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcacgttccggcagtactggtgcaatgttcccacagtgcatt 65
Query: 66 acag 69
||||
Sbjct: 66 acag 69
>RF00667;mir-33;AAIY01417522.1/685-752 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 68
Score = 63.9 bits (32), Expect = 2e-10
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcat 64
|||||||||||||||||||||| ||||||| || || |||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcacgttctggcagt-gccgtgcaatgtttccacagtgcat 63
>RF00667;mir-33;AAWZ01021152.1/40382-40314 28377:Anolis
carolinensis (green anole)
Length = 69
Score = 56.0 bits (28), Expect = 6e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgttctggtggtacccatgcaatgtttccacagtgcatt 65
||||||||||||||||||||||||||| | ||| |||||||||||| ||||||| |
Sbjct: 6 gtgcattgtagttgcattgcatgttctagcagtatttgtgcaatgtttccgcagtgcaat 65
Query: 66 acag 69
||||
Sbjct: 66 acag 69
>RF00667;mir-33;AANH01011106.1/1499-1563 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 65
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgtt 30
||||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgtt 30
>RF00667;mir-33;AAJJ01000068.1/107964-107901 7070:Tribolium
castaneum (red flour beetle)
Length = 64
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgtt 30
||||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgtt 30
>RF00667;mir-33;AAWZ01041754.1/18913-18979 28377:Anolis
carolinensis (green anole)
Length = 67
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgt 29
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;AADN02006059.1/2390-2322 9031:Gallus gallus
(chicken)
Length = 69
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgttctgg 34
|||||||||||||||||||||||| ||||
Sbjct: 6 gtgcattgtagttgcattgcatgtgctgg 34
>RF00667;mir-33;AANH01004390.1/133329-133397 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgt 29
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;BAAE01264275.1/1544-1477 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ctgcggtgcattgtagttgcattgcatgt 29
|||| ||||||||||||||||||||||||
Sbjct: 1 ctgcagtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;ABEP02003886.1/24922-24856 7739:Branchiostoma
floridae (Florida lancelet)
Length = 67
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgt 29
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;ABEP02003886.1/24513-24447 7739:Branchiostoma
floridae (Florida lancelet)
Length = 67
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgt 29
|||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;AAPN01422427.1/10575-10641 9258:Ornithorhynchus
anatinus (platypus)
Length = 67
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgt 29
||||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgt 29
>RF00667;mir-33;AANH01004216.1/19959-19891 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatg 28
||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatg 28
>RF00667;mir-33;BAAE01000948.1/5094-5161 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatg 28
||||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AAZX01017121.1/8029-8095 7425:Nasonia vitripennis
(jewel wasp)
Length = 67
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatg 28
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AADG05009493.1/1176-1111 7460:Apis mellifera
(honey bee)
Length = 66
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatg 28
|||||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatg 28
>RF00667;mir-33;AACT01006707.1/8663-8725 51511:Ciona savignyi
Length = 63
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;ABQO010273055.1/1298-1232 9315:Macropus eugenii
(tammar wallaby)
Length = 67
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;CAAE01014738.1/1624047-1623979 99883:Tetraodon
nigroviridis
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;CAAB01001000.1/62134-62064 31033:Takifugu rubripes
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;AAWU01038467.1/41288-41214 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;AAGE02018815.1/108790-108863 7159:Aedes aegypti
(yellow fever mosquito)
Length = 74
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;ABKP02018093.1/235-307 377271:Anopheles gambiae M
Length = 73
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 5 ggtgcattgtagttgcattgca 26
>RF00667;mir-33;ABJB011070400.1/4565-4636 6945:Ixodes scapularis
(black-legged tick)
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 ctgcggtgcattgtagttgcattgca 26
||||||||||||| ||||||||||||
Sbjct: 1 ctgcggtgcattgcagttgcattgca 26
>RF00667;mir-33;AAGJ02141394.1/21086-21155 7668:Strongylocentrotus
purpuratus
Length = 70
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 ggtgcattgtagttgcattgcatgt 29
|||||||||| ||||||||||||||
Sbjct: 5 ggtgcattgtcgttgcattgcatgt 29
>RF00667;mir-33;AABS01001128.1/11040-10976 7719:Ciona intestinalis
Length = 65
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
>RF00667;mir-33;AADK01019309.1/4596-4529 7091:Bombyx mori
(domestic silkworm)
Length = 68
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 6 gtgcattgtagttgcattgca 26
