miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00456;mir-34;AADN02040793.1/20235-20325 9031:Gallus gallus
(chicken)
Length = 91
Score = 165 bits (83), Expect = 1e-40
Identities = 90/91 (98%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 9 gtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatag-taaggaagcaat 67
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 gtgagtgtttctttggcagtgtcttagctggttgttgtgagcaatagttaaggaagcaat 60
Query: 68 cagcaagtatactgccctagaagtgctacac 98
|||||||||||||||||||||||||||||||
Sbjct: 61 cagcaagtatactgccctagaagtgctacac 91
>RF00456;mir-34;AANH01002669.1/122646-122735 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 85.7 bits (43), Expect = 1e-16
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 13 gtgtttctttggcagtgtcttagctggttgttgtgagcaatagtaaggaagcaatcagca 72
|||||||| |||||||||||||||||||||||||||| | | || |||||||||||||
Sbjct: 5 gtgtttctctggcagtgtcttagctggttgttgtgaggagtgagaacgaagcaatcagca 64
Query: 73 agtatactgcc 83
|||||||||||
Sbjct: 65 agtatactgcc 75
>RF00456;mir-34;AAVX01252978.1/732-820 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 73.8 bits (37), Expect = 4e-13
Identities = 65/72 (90%), Gaps = 3/72 (4%)
Strand = Plus / Plus
Query: 13 gtgtttctttggcagtgtcttagctggttgttgtgagcaat-agtaaggaagcaatcagc 71
|||||||| |||||||||||||||||||||||||| ||| | || || |||||||||||
Sbjct: 5 gtgtttctctggcagtgtcttagctggttgttgtgtgcagtcagaaa--aagcaatcagc 62
Query: 72 aagtatactgcc 83
||||||||||||
Sbjct: 63 aagtatactgcc 74
