miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAHY01129304.1/5145-5216 10090:Mus musculus (house
          mouse)
          Length = 72

 Score =  113 bits (57), Expect = 3e-25
 Identities = 63/65 (96%)
 Strand = Plus / Plus

                                                                      
Query: 9  cataaacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgcttctatgggt 68
          |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 4  cataaacccgtagatccgatcttgtggtgaagtggaccgcgcaagctcgtttctatgggt 63

               
Query: 69 ctgtg 73
          |||||
Sbjct: 64 ctgtg 68




>RF00104;mir-10;AADN02042927.1/15251-15322 9031:Gallus gallus
          (chicken)
          Length = 72

 Score =  111 bits (56), Expect = 1e-24
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                      
Query: 6  tggcataaacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgcttctatg 65
          ||||||||||||||||||||||||||||| |||| || || |||||||||||||||||||
Sbjct: 1  tggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttctatg 60

                      
Query: 66 ggtctgtgtcag 77
          ||||||||||||
Sbjct: 61 ggtctgtgtcag 72




>RF00104;mir-10;ABQO010319844.1/337-408 9315:Macropus eugenii
          (tammar wallaby)
          Length = 72

 Score = 83.8 bits (42), Expect = 3e-16
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                      
Query: 12 aaacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgcttctatgggtctg 71
          |||||||||||||||||||||||||||| | |||  ||||||||||| ||| ||||||||
Sbjct: 7  aaacccgtagatccgatcttgtggtgaaattgacttcacaagctcgcctctttgggtctg 66

                
Query: 72 tgtcag 77
          ||||||
Sbjct: 67 tgtcag 72




>RF00104;mir-10;BAAF04093499.1/4658-4587 8090:Oryzias latipes
          (Japanese medaka)
          Length = 72

 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                      
Query: 6  tggcataaacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgcttctatg 65
          ||||| ||||||||||||||||||||||||  ||   ||| |||||||||||| ||| ||
Sbjct: 1  tggcacaaacccgtagatccgatcttgtggaaaatctgacggcacaagctcgcctctgtg 60

                      
Query: 66 ggtctgtgtcag 77
          ||||| ||||||
Sbjct: 61 ggtctctgtcag 72




>RF00104;mir-10;CR936972.7/90514-90443 7955:Danio rerio
          (zebrafish)
          Length = 72

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                      
Query: 13 aacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgcttctatgggtctgt 72
          |||||||||||||||||||||| | |  | ||  ||||||||||| |||||||||||| |
Sbjct: 8  aacccgtagatccgatcttgtgataagtttgatggcacaagctcgattctatgggtctct 67

             
Query: 73 gtc 75
          |||
Sbjct: 68 gtc 70




>RF00104;mir-10;CAAK05023112.1/859-788 7955:Danio rerio
          (zebrafish)
          Length = 72

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 12 aaacccgtagatccgatcttgtgg 35
          ||||||||||||||||||||||||
Sbjct: 7  aaacccgtagatccgatcttgtgg 30




>RF00104;mir-10;AAPE01049372.1/3456-3524 59463:Myotis lucifugus
          (little brown bat)
          Length = 69

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 12 aaacccgtagatccgatcttgtggtga 38
          |||||||||||||||| ||||||||||
Sbjct: 7  aaacccgtagatccgaacttgtggtga 33




>RF00104;mir-10;BX663520.9/232508-232577 7955:Danio rerio
          (zebrafish)
          Length = 70

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 12 aaacccgtagatccgatcttgtggtga 38
          |||||||||||||||| ||||||||||
Sbjct: 7  aaacccgtagatccgaacttgtggtga 33




>RF00104;mir-10;BAAF04030492.1/777-846 8090:Oryzias latipes
          (Japanese medaka)
          Length = 70

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 12 aaacccgtagatccgatcttgtggtga 38
          |||||||||||||||| ||||||||||
Sbjct: 7  aaacccgtagatccgaacttgtggtga 33




>RF00104;mir-10;AALT01443654.1/2056-2125 42254:Sorex araneus
          (European shrew)
          Length = 70

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 12 aaacccgtagatccgatcttgtggtg 37
          |||||||||||||||| |||||||||
Sbjct: 7  aaacccgtagatccgaacttgtggtg 32




>RF00104;mir-10;ABRQ01450213.1/964-1033 9813:Procavia capensis
          (cape rock hyrax)
          Length = 70

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 12 aaacccgtagatccgatcttgtggtg 37
          |||||||||||||||| |||||||||
Sbjct: 7  aaacccgtagatccgaacttgtggtg 32




>RF00104;mir-10;BX284646.4/46761-46692 7955:Danio rerio
          (zebrafish)
          Length = 70

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 12 aaacccgtagatccgatcttgtggtg 37
          |||||||||||||||| |||||||||
Sbjct: 7  aaacccgtagatccgaacttgtggtg 32




>RF00104;mir-10;ABEP02005607.1/34557-34626 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 70

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 9  cataaacccgtagatccgatcttgtg 34
          ||||||||||||||||||| ||||||
Sbjct: 4  cataaacccgtagatccgaacttgtg 29