miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00657;mir-184;ABRQ01361613.1/429-346 9813:Procavia capensis
(cape rock hyrax)
Length = 84
Score = 113 bits (57), Expect = 4e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 12 cccttatcacttttccagcccagctttatgactgtaagtgttggacggagaactgataag 71
||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 12 cccttatcacttttccagcccagcttttggattctaagtgttggacggagaactgataag 71
Query: 72 ggtaggtgattga 84
|||||||||||||
Sbjct: 72 ggtaggtgattga 84
>RF00657;mir-184;AAPY01671193.1/13062-12979 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 109 bits (55), Expect = 6e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 10 tccccttatcacttttccagcccagctttatgactgtaagtgttggacggagaactgata 69
||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 10 tccccttatcacttttccagcccagctttgtgactctgagtgttggacggagaactgata 69
Query: 70 agggtaggtga 80
||||| |||||
Sbjct: 70 agggtgggtga 80
>RF00657;mir-184;AAQR01215444.1/887-805 30611:Otolemur garnettii
(small-eared galago)
Length = 83
Score = 109 bits (55), Expect = 6e-24
Identities = 77/83 (92%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 2 cagtcacgtccccttatcacttttccagcccagctttatgactgtaagtgttggacggag 61
||||||| ||||||||||||||||||||||||||| | ||||| || |||||||||||||
Sbjct: 2 cagtcacatccccttatcacttttccagcccagctgtgtgactcta-gtgttggacggag 60
Query: 62 aactgataagggtaggtgattga 84
|||||||||||||||||| ||||
Sbjct: 61 aactgataagggtaggtggttga 83
>RF00657;mir-184;AAKN02055953.1/70434-70517 10141:Cavia porcellus
(domestic guinea pig)
Length = 84
Score = 109 bits (55), Expect = 6e-24
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 9 gtccccttatcacttttccagcccagctttatgactgtaagtgttggacggagaactgat 68
|||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 9 gtccccttatcacttttccagcccagctttgtgattgtcagtgttggacggagaactgat 68
Query: 69 aagggtaggtg 79
|||||| ||||
Sbjct: 69 aagggtgggtg 79
>RF00657;mir-184;AC087557.20/93707-93625 10090:Mus musculus (house
mouse)
Length = 83
Score = 103 bits (52), Expect = 3e-22
Identities = 65/68 (95%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 13 ccttatcacttttccagcccagctttatgactgtaagtgttggacggagaactgataagg 72
||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||
Sbjct: 13 ccttatcacttttccagcc-agctttgtgactctaagtgttggacggagaactgataagg 71
Query: 73 gtaggtga 80
||||||||
Sbjct: 72 gtaggtga 79
>RF00657;mir-184;AAYZ01335901.1/553-636 9978:Ochotona princeps
(American pika)
Length = 84
Score = 95.6 bits (48), Expect = 8e-20
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 12 cccttatcacttttccagcccagctttatgactgtaagtgttggacggagaactgataag 71
||||||||||||||||||||||||||| ||| | | | ||||||||||||||||||||||
Sbjct: 12 cccttatcacttttccagcccagctttgtgattctgactgttggacggagaactgataag 71
Query: 72 ggtaggtgattg 83
|||||||||||
Sbjct: 72 cgtaggtgattg 83
>RF00657;mir-184;AAHX01056180.1/5344-5426 10116:Rattus norvegicus
(Norway rat)
Length = 83
Score = 89.7 bits (45), Expect = 5e-18
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 12 cccttatcacttttccagcccagctttatgactgtaagtgttggacggagaactgataag 71
||||||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||||
Sbjct: 12 cccttatcagttttccagcc-agctttgtgactgtaaatgttggacggagaactgataag 70
Query: 72 ggtaggtga 80
|||| ||||
Sbjct: 71 ggtaagtga 79
>RF00657;mir-184;AADN02038826.1/1382-1299 9031:Gallus gallus
(chicken)
Length = 84
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 11 ccccttatcacttttccagcccagctttatgactgtaagtgttggacggagaactgataa 70
||||||||||||||||||||||||||| | || | | |||||||||||||||||||||
Sbjct: 11 ccccttatcacttttccagcccagcttcttcgctctgactgttggacggagaactgataa 70
Query: 71 gggt 74
||||
Sbjct: 71 gggt 74
>RF00657;mir-184;AC147209.3/61848-61765 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 84
Score = 63.9 bits (32), Expect = 3e-10
Identities = 56/62 (90%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 13 ccttatcacttttccagcccagcttt--atgactgtaagtgttggacggagaactgataa 70
|||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct: 13 ccttatcacttttccagcccagcttttcatgac--aaactgttggacggagaactgataa 70
Query: 71 gg 72
||
Sbjct: 71 gg 72
>RF00657;mir-184;AAPN01074140.1/2574-2491 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 5 tcacgtccccttatcacttttccagcccagctttatgactgtaagtgttggacggagaac 64
||||||| | |||||||||||||||||||||||| || | || |||||||||||||
Sbjct: 5 tcacgtctctttatcacttttccagcccagctttctggttctagccgttggacggagaat 64
Query: 65 tgataagggta 75
|||||||||||
Sbjct: 65 tgataagggta 75
>RF00657;mir-184;BAAF04083164.1/7464-7548 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 60.0 bits (30), Expect = 5e-09
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 13 ccttatcacttttccagcccagctttat-gactgtaagtgttggacggagaactgataag 71
|||||||||||||||||||||||| | | | ||||| |||||||||||||||||||||
Sbjct: 13 ccttatcacttttccagcccagctatgtggtctgtattcgttggacggagaactgataag 72
Query: 72 gg 73
||
Sbjct: 73 gg 74
>RF00657;mir-184;AANN01245614.1/108-185 9365:Erinaceus europaeus
(western European hedgehog)
Length = 78
Score = 54.0 bits (27), Expect = 3e-07
Identities = 53/62 (85%), Gaps = 6/62 (9%)
Strand = Plus / Plus
Query: 13 ccttatcacttttccagcccagctttatgactgtaagtgttggacggagaactgataagg 72
|||| ||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct: 13 ccttgtcacttttccagcccagctttgtga------gtgctggacggagaactgataagg 66
Query: 73 gt 74
||
Sbjct: 67 gt 68
>RF00657;mir-184;CR352253.9/159514-159598 7955:Danio rerio
(zebrafish)
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 6 cacgtccccttatcacttttccagcccagct 36
|||||| ||||||||||||||||||||||||
Sbjct: 6 cacgtctccttatcacttttccagcccagct 36
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 gttggacggagaactgataaggg 73
|||||||||||||||||||||||
Sbjct: 52 gttggacggagaactgataaggg 74
>RF00657;mir-184;CAAB01001620.1/43106-43190 31033:Takifugu
rubripes
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tgttggacggagaactgataagggta 75
||||||||||||||||||||||||||
Sbjct: 51 tgttggacggagaactgataagggta 76
>RF00657;mir-184;BAAF04041701.1/312-228 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tgttggacggagaactgataagggta 75
||||||||||||||||||||||||||
Sbjct: 51 tgttggacggagaactgataagggta 76
>RF00657;mir-184;AAVX01446026.1/144-63 7868:Callorhinchus milii
(ghost shark)
Length = 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 49 gtgttggacggagaactgataaggg 73
|||||||||||||||||||||||||
Sbjct: 47 gtgttggacggagaactgataaggg 71
>RF00657;mir-184;CR356246.5/16955-16871 7955:Danio rerio
(zebrafish)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 ccttatcacttttccagcccagct 36
||||||||||||||||||||||||
Sbjct: 13 ccttatcacttttccagcccagct 36
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 gttggacggagaactgataaggg 73
|||||||||||||||||||||||
Sbjct: 52 gttggacggagaactgataaggg 74
>RF00657;mir-184;AANH01000282.1/6070-5986 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 ccttatcacttttccagcccagct 36
||||||||||||||||||||||||
Sbjct: 13 ccttatcacttttccagcccagct 36
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 gttggacggagaactgataaggg 73
|||||||||||||||||||||||
Sbjct: 52 gttggacggagaactgataaggg 74
>RF00657;mir-184;AAZO01006369.1/2415-2497 121224:Pediculus humanus
corporis (human body louse)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tgttggacggagaactgataaggg 73
||||||||||||||||||||||||
Sbjct: 49 tgttggacggagaactgataaggg 72
