miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00707;mir-197;AAGU02203366.1/857-931 9785:Loxodonta africana
(African savanna elephant)
Length = 75
Score = 133 bits (67), Expect = 3e-31
Identities = 73/75 (97%)
Strand = Plus / Plus
Query: 1 ggctgtgccgggtagagagggcagtgggaggtaagagctcttcacccttcaccaccttct 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 ggctgtgccgggtagagagggcagtgggaggtcagagctcttcacccttcaccaccttct 60
Query: 61 ccacccggcatggcc 75
|||||| ||||||||
Sbjct: 61 ccacccagcatggcc 75
>RF00707;mir-197;ABRP01173465.1/3087-3009 132908:Pteropus vampyrus
(large flying fox)
Length = 79
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 11 ggtagagagggcagtgggaggtaagagctcttcacccttcaccaccttctccacccggca 70
||||||| ||||||||||||||| | |||| ||||||||| ||||| |||| ||| |||
Sbjct: 15 ggtagagcgggcagtgggaggtacgcgctcctcacccttccccaccacctccgcccagca 74
Query: 71 tggcc 75
|||||
Sbjct: 75 tggcc 79
>RF00707;mir-197;ABRQ01203185.1/1385-1305 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 gctgtgccgggtagagagggcagtgggagg 31
||||||||||||||||||||| ||||||||
Sbjct: 2 gctgtgccgggtagagagggctgtgggagg 31
>RF00707;mir-197;AAGJ02163850.1/798-859 7668:Strongylocentrotus
purpuratus
Length = 62
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 26 gggaggtaagagctcttcacccttc 50
|||||||||||||| ||||||||||
Sbjct: 17 gggaggtaagagcttttcacccttc 41
