miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00646;mir-204;AAFR03028287.1/51900-52003 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 104
Score = 170 bits (86), Expect = 2e-42
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 17 catgtgactcgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggctgg 76
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 11 catgtgactcgtggacttccctttgtcatcctatgcctgagaatatatgaagggggctgg 70
Query: 77 gaaggcaaagggacgttcaattgtcatcactggc 110
||||||||||||||||||||| ||||||||||||
Sbjct: 71 gaaggcaaagggacgttcaatcgtcatcactggc 104
>RF00646;mir-204;AC187999.1/39408-39305 9031:Gallus gallus (chicken)
Length = 104
Score = 157 bits (79), Expect = 4e-38
Identities = 88/91 (96%)
Strand = Plus / Plus
Query: 15 ttcatgtgactcgtggacttccctttgtcatcctatgcctgagaatatatgaaggaggct 74
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 9 ttcatgtgacccgtggacttccctttgtcatcctatgcctgagaatatatgaagggggct 68
Query: 75 gggaaggcaaagggacgttcaattgtcatca 105
|||||||||||||||||||||| ||||||||
Sbjct: 69 gggaaggcaaagggacgttcaactgtcatca 99
>RF00646;mir-204;AAVX01052255.1/1202-1305 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 109 bits (55), Expect = 8e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 32 cttccctttgtcatcctatgcctgagaatatatgaaggaggctgggaaggcaaagggacg 91
||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||| |
Sbjct: 26 cttccctttgtcatcctatgcctgaaattatatgaagggggctgggaaggcaaagggatg 85
Query: 92 ttcaattgtcatcactggc 110
||||| |||||||| ||||
Sbjct: 86 ttcaagtgtcatcagtggc 104
>RF00646;mir-204;AANN01660997.1/781-876 9365:Erinaceus europaeus
(western European hedgehog)
Length = 96
Score = 81.8 bits (41), Expect = 2e-15
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 13 tcttcatgtgactcgtggacttccctttgtcatcctatgcctgagaatatatgaaggagg 72
||||||||||||||| |||||||||||||||||| ||||||||| |||||| |||||| |
Sbjct: 7 tcttcatgtgactcgaggacttccctttgtcatcttatgcctgaaaatata-gaaggatg 65
Query: 73 ctgggaaggcaaagggacgtt 93
||| || ||||| |||||||
Sbjct: 66 ctgtgatggcaagaggacgtt 86
>RF00646;mir-204;BX323080.10/77917-77816 7955:Danio rerio
(zebrafish)
Length = 102
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 16 tcatgtgactcgtggacttccctttgtcatcctatgcctg 55
||||||||| |||||||||||||||||||||||||||||
Sbjct: 10 tcatgtgacctgtggacttccctttgtcatcctatgcctg 49
>RF00646;mir-204;ABPM01009536.1/476-373 106582:Maylandia zebra
(zebra mbuna)
Length = 104
Score = 58.0 bits (29), Expect = 2e-08
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 28 tggacttccctttgtcatcctatgcctgagaat-atatgaaggaggctgggaaggcaaag 86
|||||||||||||||||||||||||||| || | ||| || | ||||||||||||||||
Sbjct: 22 tggacttccctttgtcatcctatgcctg-gattaatacaaaaggggctgggaaggcaaag 80
Query: 87 ggacg 91
|||||
Sbjct: 81 ggacg 85
>RF00646;mir-204;AANH01001880.1/194334-194437 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 104
Score = 58.0 bits (29), Expect = 2e-08
Identities = 67/77 (87%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 16 tcatgtgactcgtggacttccctttgtcatcctatgcctgagaat-atatgaaggaggct 74
|||||||||| ||| |||||||||||||||||||||||| || | ||| || | ||||
Sbjct: 10 tcatgtgacttatggccttccctttgtcatcctatgcctg-gactcatacaaaaggggct 68
Query: 75 gggaaggcaaagggacg 91
|||||||||||||||||
Sbjct: 69 gggaaggcaaagggacg 85
>RF00646;mir-204;AY866210.1/448-549 9600:Pongo pygmaeus (Bornean
orangutan)
Length = 102
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 17 catgtgactcgtggacttccctttgtcatcct 48
||||||||| ||||||||||||||||||||||
Sbjct: 11 catgtgacttgtggacttccctttgtcatcct 42
>RF00646;mir-204;AAQQ01222771.1/904-1005 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 102
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 16 tcatgtgactcgtggacttccctttgtcatcctatgcct 54
|||||||||| |||| ||||||||||||||||| |||||
Sbjct: 10 tcatgtgacttgtgggcttccctttgtcatcctttgcct 48
>RF00646;mir-204;BAAE01000360.1/4392-4495 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 54.0 bits (27), Expect = 4e-07
Identities = 53/59 (89%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 32 cttccctttgtcatcctatgcctgagaat-atatgaaggaggctgggaaggcaaaggga 89
|||||||||||||||||||||||| |||| | || || | |||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg-gaatcaaataaaaggggctgggaaggcaaaggga 83
>RF00646;mir-204;AAFR03022736.1/24229-24330 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 18 atgtgactcgtggacttccctttgtcatcctatgcctg 55
||||||| |||| ||||||||||||||||||||||||
Sbjct: 12 atgtgacctgtgggcttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAGW01512306.1/1681-1580 9986:Oryctolagus
cuniculus (rabbit)
Length = 102
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 17 catgtgactcgtggacttccctttgtcatcctatgcct 54
||||||||| |||| ||||||||||||||||| |||||
Sbjct: 11 catgtgactggtgggcttccctttgtcatcctttgcct 48
>RF00646;mir-204;AADN02066720.1/35863-35790 9031:Gallus gallus
(chicken)
Length = 74
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 cttccctttgtcatcctatgcctgag 57
||||||||||||||||||||||||||
Sbjct: 9 cttccctttgtcatcctatgcctgag 34
>RF00646;mir-204;AAWZ01036299.1/27929-27828 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 27 gtggacttccctttgtcatcctatgcctg 55
|||| ||||||||||||||||||||||||
Sbjct: 21 gtgggcttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AADN02040397.1/21108-21007 9031:Gallus gallus
(chicken)
Length = 102
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 27 gtggacttccctttgtcatcctatgcctg 55
|||| ||||||||||||||||||||||||
Sbjct: 21 gtgggcttccctttgtcatcctatgcctg 49
>RF00646;mir-204;CAAE01014555.1/947630-947730 99883:Tetraodon
nigroviridis
Length = 101
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 27 gtggacttccctttgtcatcctatgcctg 55
|||| ||||||||||||||||||||||||
Sbjct: 21 gtgggcttccctttgtcatcctatgcctg 49
>RF00646;mir-204;BAAE01064700.1/3191-3291 8090:Oryzias latipes
(Japanese medaka)
Length = 101
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 27 gtggacttccctttgtcatcctatgcctg 55
|||| ||||||||||||||||||||||||
Sbjct: 21 gtgggcttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AAPN01089717.1/13112-13213 9258:Ornithorhynchus
anatinus (platypus)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 cttccctttgtcatcctatgcctg 55
||||||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AANN01198559.1/1392-1493 9365:Erinaceus europaeus
(western European hedgehog)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 19 tgtgactcgtggacttccctttgtcatcctatgcct 54
||||||| |||| ||||||||||||||||| |||||
Sbjct: 13 tgtgacttgtgggcttccctttgtcatcctttgcct 48
>RF00646;mir-204;CAAB01008029.1/2077-2179 31033:Takifugu rubripes
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 28 tggacttccctttgtcatcctatgcctg 55
||||||||||||||| ||||||||||||
Sbjct: 22 tggacttccctttgttatcctatgcctg 49
>RF00646;mir-204;AANH01001574.1/139065-138965 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 cttccctttgtcatcctatgcctg 55
||||||||||||||||||||||||
Sbjct: 26 cttccctttgtcatcctatgcctg 49
>RF00646;mir-204;AANH01011880.1/65628-65527 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 16 tcatgtgactcgtggacttccctttgtcatcctatgcctg 55
||||||||| ||||| |||||||||||||||| ||||||
Sbjct: 10 tcatgtgacccgtgggtttccctttgtcatcctttgcctg 49
>RF00646;mir-204;AAKN02016253.1/66521-66421 10141:Cavia porcellus
(domestic guinea pig)
Length = 101
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 20 gtgactcgtggacttccctttgtcatcctatgcct 54
|||||| |||| ||||||||||||||||| |||||
Sbjct: 14 gtgacttgtgggcttccctttgtcatcctttgcct 48
>RF00646;mir-204;CR450827.5/52029-51927 7955:Danio rerio
(zebrafish)
Length = 103
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 ttccctttgtcatcctatgcctg 55
|||||||||||||||||||||||
Sbjct: 28 ttccctttgtcatcctatgcctg 50
>RF00646;mir-204;AAVX01164390.1/969-1070 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 33 ttccctttgtcatcctatgcctg 55
|||||||||||||||||||||||
Sbjct: 27 ttccctttgtcatcctatgcctg 49
>RF00646;mir-204;ABRQ01444608.1/1068-1169 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 17 catgtgactcgtggacttccctttgtcatcctatgcct 54
|||||||| |||| ||||||||||||||||| |||||
Sbjct: 11 catgtgacctgtgggcttccctttgtcatcctttgcct 48
