miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00656;mir-205;AAFC03121357.1/8897-8998 9913:Bos taurus (cattle)
Length = 102
Score = 159 bits (80), Expect = 9e-39
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 17 tccatgtgcttctcttgtccttcattccaccggagtctgtctcatacccaaccagatttc 76
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 11 tccatgtgcttctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttc 70
Query: 77 agtggagtgaagttcaggaggcatggagctga 108
|||||||||||||||||||||| |||| ||||
Sbjct: 71 agtggagtgaagttcaggaggcgtggaactga 102
>RF00656;mir-205;ABRQ01315849.1/3505-3606 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 157 bits (79), Expect = 4e-38
Identities = 88/91 (96%)
Strand = Plus / Plus
Query: 14 caatccatgtgcttctcttgtccttcattccaccggagtctgtctcatacccaaccagat 73
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8 caatccatgtgtttctcttgtccttcattccaccggagtctgtttcatacccaaccagat 67
Query: 74 ttcagtggagtgaagttcaggaggcatggag 104
||||||||||||||||||||||| |||||||
Sbjct: 68 ttcagtggagtgaagttcaggagacatggag 98
>RF00656;mir-205;CAAA01026708.1/9339-9240 10090:Mus musculus (house
mouse)
Length = 100
Score = 119 bits (60), Expect = 8e-27
Identities = 76/80 (95%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 28 ctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaa 87
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct: 21 ctcttgtccttcattccaccggagtctgtcttatgcc-aaccagatttcagtggagtgaa 79
Query: 88 gttcaggaggcatggagctg 107
| ||||||||||||||||||
Sbjct: 80 gctcaggaggcatggagctg 99
>RF00656;mir-205;AAFR03023170.1/5678-5779 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 101 bits (51), Expect = 2e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 26 ttctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtg 85
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 20 ttctcttgtccttcattccaccggagtctgtctcatatctaatcagatttcagtggagtg 79
Query: 86 aag 88
|||
Sbjct: 80 aag 82
>RF00656;mir-205;ABQF01054274.1/5298-5198 59729:Taeniopygia guttata
Length = 101
Score = 101 bits (51), Expect = 2e-21
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 26 ttctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtg 85
|||| ||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct: 20 ttctgttgtccttcattccaccggagtctgtctc-tagctaaccagatttcagtggagtg 78
Query: 86 aagttcaggaggcatggagctga 108
||| || |||||||||||||||
Sbjct: 79 aagcacaagaggcatggagctga 101
>RF00656;mir-205;AADN02044974.1/39714-39814 9031:Gallus gallus
(chicken)
Length = 101
Score = 101 bits (51), Expect = 2e-21
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 26 ttctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtg 85
|||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 19 ttctgttgtccttcattccaccggagtctgtctcgtacctaaccagatttcagtggagtg 78
Query: 86 aag 88
|||
Sbjct: 79 aag 81
>RF00656;mir-205;AAWZ01003024.1/18367-18468 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 93.7 bits (47), Expect = 5e-19
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 26 ttctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtg 85
|||| |||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 20 ttctattgtccttcattccaccggagtctgtctcatatctaatcagatttcagtggagtg 79
Query: 86 aag 88
|||
Sbjct: 80 aag 82
>RF00656;mir-205;AALT01450952.1/1320-1220 42254:Sorex araneus
(European shrew)
Length = 101
Score = 91.7 bits (46), Expect = 2e-18
Identities = 68/74 (91%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 32 tgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaagttc 91
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||| |
Sbjct: 26 tgtccttcattccaccggagtctgtctc-tgcacaaccagatttcagtggagtgaagagc 84
Query: 92 aggaggcatggagc 105
||||||| ||||||
Sbjct: 85 aggaggcgtggagc 98
>RF00656;mir-205;AAKN02017853.1/245570-245471 10141:Cavia porcellus
(domestic guinea pig)
Length = 100
Score = 77.8 bits (39), Expect = 3e-14
Identities = 72/82 (87%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 26 ttctcttgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtg 85
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 20 ttctcttgtccttcattccaccggagtctgtct--gcggcaaccagacttcagtggagtg 77
Query: 86 aagttcaggaggcatggagctg 107
||| ||||||| | ||||||||
Sbjct: 78 aagctcaggagtcgtggagctg 99
>RF00656;mir-205;AAVX01484155.1/142-243 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 67.9 bits (34), Expect = 3e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 32 tgtccttcattccaccggagtctgtctcat-acccaaccagatttcagtggagtgaag 88
||||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 25 tgtccttcattccaccggagtctgtgacataaaccaaccagatttcagtggggtgaag 82
>RF00656;mir-205;AANH01002613.1/123689-123785 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 60.0 bits (30), Expect = 6e-09
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 32 tgtccttcattccaccggagtctgtctcatacccaaccagatttcagtggagtgaagt 89
||||||||||||||||||||||||||| | | | ||||||||||||||| |||||||
Sbjct: 22 tgtccttcattccaccggagtctgtctgtttcac-accagatttcagtggtgtgaagt 78
>RF00656;mir-205;BAAF04011157.1/1235-1133 8090:Oryzias latipes
(Japanese medaka)
Length = 103
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 32 tgtccttcattccaccggagtctgt 56
|||||||||||||||||||||||||
Sbjct: 26 tgtccttcattccaccggagtctgt 50
>RF00656;mir-205;AL929087.4/70188-70086 7955:Danio rerio
(zebrafish)
Length = 103
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 tccttcattccaccggagtctgt 56
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;CAAB01006173.1/586-688 31033:Takifugu rubripes
Length = 103
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 tccttcattccaccggagtctgt 56
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;AANH01007448.1/5834-5732 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 103
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 tccttcattccaccggagtctgt 56
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;BAAE01019177.1/1934-2036 8090:Oryzias latipes
(Japanese medaka)
Length = 103
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 34 tccttcattccaccggagtctgt 56
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
