miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AANN01270542.1/4439-4364 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 76

 Score =  131 bits (66), Expect = 2e-30
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                      
Query: 12 gccacatgcttctttatatccccatatggattactttgctatggaatgtaaggaagtgtg 71
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7  gccacatgcttctttatatccccatatggattactttgctatggaatgtaaggaagtgtg 66

                
Query: 72 tggttt 77
          ||||||
Sbjct: 67 tggttt 72




>RF00103;mir-1;ABRQ01222467.1/741-815 9813:Procavia capensis (cape
          rock hyrax)
          Length = 75

 Score =  127 bits (64), Expect = 2e-29
 Identities = 74/76 (97%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                      
Query: 6  cccgaggccacatgcttctttatatccccatatggattactttgctatggaatgtaagga 65
          |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 1  cccgaggccacatgcttctttatatccccatacggattac-ttgctatggaatgtaagga 59

                          
Query: 66 agtgtgtggtttcggc 81
          ||||||||||||||||
Sbjct: 60 agtgtgtggtttcggc 75




>RF00103;mir-1;ABRO01155645.1/17273-17348 10020:Dipodomys ordii
          (Ord's kangaroo rat)
          Length = 76

 Score =  111 bits (56), Expect = 1e-24
 Identities = 62/64 (96%)
 Strand = Plus / Plus

                                                                      
Query: 11 ggccacatgcttctttatatccccatatggattactttgctatggaatgtaaggaagtgt 70
          ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 6  ggccacatgcttctttatatccccatagggattactgtgctatggaatgtaaggaagtgt 65

              
Query: 71 gtgg 74
          ||||
Sbjct: 66 gtgg 69




>RF00103;mir-1;AADN02018283.1/5522-5597 9031:Gallus gallus
          (chicken)
          Length = 76

 Score =  103 bits (52), Expect = 4e-22
 Identities = 61/64 (95%)
 Strand = Plus / Plus

                                                                      
Query: 15 acatgcttctttatatccccatatggattactttgctatggaatgtaaggaagtgtgtgg 74
          ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||
Sbjct: 10 acatgcttctttatatccccatatggattaggctgctatggaatgtaaggaagtgtgtgg 69

              
Query: 75 tttc 78
          ||||
Sbjct: 70 tttc 73




>RF00103;mir-1;AAWZ01012531.1/31936-31861 28377:Anolis
          carolinensis (green anole)
          Length = 76

 Score = 95.6 bits (48), Expect = 9e-20
 Identities = 60/64 (93%)
 Strand = Plus / Plus

                                                                      
Query: 15 acatgcttctttatatccccatatggattactttgctatggaatgtaaggaagtgtgtgg 74
          ||||||||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||
Sbjct: 10 acatgcttctttatatctccatatgaattgccttgctatggaatgtaaggaagtgtgtgg 69

              
Query: 75 tttc 78
          ||||
Sbjct: 70 tttc 73




>RF00103;mir-1;AALT01102453.1/1268-1343 42254:Sorex araneus
          (European shrew)
          Length = 76

 Score = 93.7 bits (47), Expect = 3e-19
 Identities = 59/63 (93%)
 Strand = Plus / Plus

                                                                      
Query: 15 acatgcttctttatatccccatatggattactttgctatggaatgtaaggaagtgtgtgg 74
          ||||||||||||||||||||||| ||||  ||| ||||||||||||||||||||||||||
Sbjct: 10 acatgcttctttatatccccatacggatctcttggctatggaatgtaaggaagtgtgtgg 69

             
Query: 75 ttt 77
          |||
Sbjct: 70 ttt 72




>RF00103;mir-1;AAHY01004442.1/497-572 10090:Mus musculus (house
          mouse)
          Length = 76

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 50 ctatggaatgtaaggaagtgtgtggttt 77
          ||||||||||||||||||||||||||||
Sbjct: 45 ctatggaatgtaaggaagtgtgtggttt 72




>RF00103;mir-1;BAAF04047944.1/3728-3653 8090:Oryzias latipes
          (Japanese medaka)
          Length = 76

 Score = 56.0 bits (28), Expect = 7e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 51 tatggaatgtaaggaagtgtgtggtttc 78
          ||||||||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaggaagtgtgtggtttc 73




>RF00103;mir-1;CAAK05040482.1/7048-7123 7955:Danio rerio
          (zebrafish)
          Length = 76

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 50 ctatggaatgtaaggaagtgtgtgg 74
          |||||||||||||||||||||||||
Sbjct: 45 ctatggaatgtaaggaagtgtgtgg 69




>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
          (ghost shark)
          Length = 76

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                           
Query: 20 cttctttatatccccatatggattactttgctatggaatgtaaggaagt 68
          |||||| |||| |||||||| | | |||||||||||||||||| |||||
Sbjct: 15 cttcttcatatgcccatatgaaatgctttgctatggaatgtaaagaagt 63