miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00646;mir-204;AY866210.1/448-549 9600:Pongo pygmaeus (Bornean
           orangutan)
          Length = 102

 Score =  178 bits (90), Expect = 1e-44
 Identities = 93/94 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagg 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   gccatgtgacttgtggacttccctttgtcatccttcgcctagggctctgagcagggcagg 68

                                             
Query: 67  gacagcaaaggggtgctcagttgtcacttcccac 100
           ||||||||||||||||||||||||||||||||||
Sbjct: 69  gacagcaaaggggtgctcagttgtcacttcccac 102




>RF00646;mir-204;AAGW01512306.1/1681-1580 9986:Oryctolagus
          cuniculus (rabbit)
          Length = 102

 Score =  147 bits (74), Expect = 3e-35
 Identities = 86/90 (95%)
 Strand = Plus / Plus

                                                                      
Query: 4  ctggccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggc 63
          |||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 6  ctggccatgtgactggtgggcttccctttgtcatcctttgcctagggttctgagcagggc 65

                                        
Query: 64 agggacagcaaaggggtgctcagttgtcac 93
          |||||||||||||||||||||||| |||||
Sbjct: 66 agggacagcaaaggggtgctcagtcgtcac 95




>RF00646;mir-204;ABRQ01444608.1/1068-1169 9813:Procavia capensis
           (cape rock hyrax)
          Length = 102

 Score =  139 bits (70), Expect = 8e-33
 Identities = 88/94 (93%)
 Strand = Plus / Plus

                                                                       
Query: 7   gccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagg 66
           |||||||||| |||||||||||||||||||||||| |||||||||||||||  |||||||
Sbjct: 9   gccatgtgacctgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagg 68

                                             
Query: 67  gacagcaaaggggtgctcagttgtcacttcccac 100
           |||||||||||| |||||||||||||| ||||||
Sbjct: 69  gacagcaaagggctgctcagttgtcacctcccac 102




>RF00646;mir-204;AAQQ01222771.1/904-1005 43179:Spermophilus
           tridecemlineatus (thirteen-lined ground squirrel)
          Length = 102

 Score =  135 bits (68), Expect = 1e-31
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                       
Query: 9   catgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcaggga 68
           ||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||||||
Sbjct: 11  catgtgacttgtgggcttccctttgtcatcctttgcctagggctttgagtggggcaggga 70

                                           
Query: 69  cagcaaaggggtgctcagttgtcacttcccac 100
           ||||||||||||||||||| ||||| ||||||
Sbjct: 71  cagcaaaggggtgctcagtcgtcacctcccac 102




>RF00646;mir-204;AAKN02016253.1/66521-66421 10141:Cavia porcellus
          (domestic guinea pig)
          Length = 101

 Score =  117 bits (59), Expect = 3e-26
 Identities = 81/87 (93%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  gccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagg 66
          |||| |||||||||||||||||||||||||||||| ||||||||||||||  ||||||||
Sbjct: 9  gccacgtgacttgtgggcttccctttgtcatcctttgcctagggctctga-tagggcagg 67

                                     
Query: 67 gacagcaaaggggtgctcagttgtcac 93
          ||| |||||||||| ||||||||||||
Sbjct: 68 gactgcaaaggggtactcagttgtcac 94




>RF00646;mir-204;AANN01198559.1/1392-1493 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 102

 Score =  111 bits (56), Expect = 2e-24
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                      
Query: 11 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 70
          ||||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||
Sbjct: 13 tgtgacttgtgggcttccctttgtcatcctttgcctagggttatgagtagggcagggaca 72

                      
Query: 71 gcaaaggggtgc 82
          ||||||||||||
Sbjct: 73 gcaaaggggtgc 84




>RF00646;mir-204;AAHY01062369.1/281-180 10090:Mus musculus (house
          mouse)
          Length = 102

 Score = 93.7 bits (47), Expect = 4e-19
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                      
Query: 11 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 70
          |||||| |||||||||||||||||||||||| ||||||| |||||||   |||| |||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctttgcctaggcctctgagtgaggcaaggaca 72

                                 
Query: 71 gcaaaggggtgctcagttgtcac 93
          ||||||||| ||||||| |||||
Sbjct: 73 gcaaaggggggctcagtggtcac 95




>RF00646;mir-204;AAGV020630976.1/4916-5016 9361:Dasypus
          novemcinctus (nine-banded armadillo)
          Length = 101

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 74/83 (89%), Gaps = 1/83 (1%)
 Strand = Plus / Plus

                                                                      
Query: 4  ctggccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggc 63
          ||||||||| ||| |||||||||||||||||||||||| ||||| || || |||  ||||
Sbjct: 6  ctggccatgggacctgtgggcttccctttgtcatcctttgccta-ggatccgagtggggc 64

                                 
Query: 64 agggacagcaaaggggtgctcag 86
          ||||||| |||||||||||||||
Sbjct: 65 agggacaacaaaggggtgctcag 87




>RF00646;mir-204;AAFR03022736.1/24229-24330 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 102

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                      
Query: 10 atgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggac 69
          ||||||| |||||||||||||||||||||||  |||| |   || |||  ||||||||||
Sbjct: 12 atgtgacctgtgggcttccctttgtcatcctatgcctggaaatcagagtggggcagggac 71

                                
Query: 70 agcaaaggggtgctcagttgtc 91
          ||||||||| ||||||| ||||
Sbjct: 72 agcaaagggatgctcagctgtc 93




>RF00646;mir-204;CAAE01014555.1/947630-947730 99883:Tetraodon
          nigroviridis
          Length = 101

 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 66/76 (86%), Gaps = 1/76 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 70
          |||||| |||||||||||||||||||||||  |||| | |||| ||  | ||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 71

                          
Query: 71 gcaaaggggtgctcag 86
          |||||||| |||||||
Sbjct: 72 gcaaagggatgctcag 87




>RF00646;mir-204;BAAE01064700.1/3191-3291 8090:Oryzias latipes
          (Japanese medaka)
          Length = 101

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 71/83 (85%), Gaps = 1/83 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 70
          |||||| |||||||||||||||||||||||  |||| | ||| ||   | ||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagct-tggataaggcagggaca 71

                                 
Query: 71 gcaaaggggtgctcagttgtcac 93
          |||||||| ||||||| ||||||
Sbjct: 72 gcaaagggatgctcagctgtcac 94




>RF00646;mir-204;AAWZ01036299.1/27929-27828 28377:Anolis
          carolinensis (green anole)
          Length = 102

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                      
Query: 13 tgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggacagc 72
          |||| |||||||||||||||||||||||  |||| | | ||  ||   ||||||||||||
Sbjct: 15 tgacctgtgggcttccctttgtcatcctatgcctggagatcgcagagaggcagggacagc 74

                        
Query: 73 aaaggggtgctcag 86
          ||||||||||||||
Sbjct: 75 aaaggggtgctcag 88




>RF00646;mir-204;AADN02040397.1/21108-21007 9031:Gallus gallus
          (chicken)
          Length = 102

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                      
Query: 11 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 70
          |||||| |||||||||||||||||||||||  |||| | | ||  ||   ||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72

                               
Query: 71 gcaaaggggtgctcagttgtc 91
          |||||||| ||||||| ||||
Sbjct: 73 gcaaagggatgctcagctgtc 93




>RF00646;mir-204;AANH01001574.1/139065-138965 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 101

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 57/66 (86%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                      
Query: 20 tgggcttccctttgtcatccttcgcctagggctctgagcagggcagggacagcaaagggg 79
          |||||||||||||||||||||  |||| | |||| ||  | |||||||||||||||||| 
Sbjct: 22 tgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggacagcaaaggga 80

                
Query: 80 tgctca 85
          ||||||
Sbjct: 81 tgctca 86




>RF00646;mir-204;AAFR03028287.1/51900-52003 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 104

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 8  ccatgtgacttgtgggcttccctttgtcatcct 40
          |||||||||| |||| |||||||||||||||||
Sbjct: 10 ccatgtgactcgtggacttccctttgtcatcct 42




>RF00646;mir-204;BX323080.10/77917-77816 7955:Danio rerio
          (zebrafish)
          Length = 102

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 9  catgtgacttgtgggcttccctttgtcatcct 40
          |||||||| ||||| |||||||||||||||||
Sbjct: 11 catgtgacctgtggacttccctttgtcatcct 42




>RF00646;mir-204;AANH01001880.1/194334-194437 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 104

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 9  catgtgacttgtgggcttccctttgtcatcct 40
          |||||||||| ||| |||||||||||||||||
Sbjct: 11 catgtgacttatggccttccctttgtcatcct 42




>RF00646;mir-204;ABPM01009536.1/476-373 106582:Maylandia zebra
          (zebra mbuna)
          Length = 104

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 7  gccatgtgacttgtgggcttccctttgtcatcct 40
          |||||||||| | ||| |||||||||||||||||
Sbjct: 9  gccatgtgacatatggacttccctttgtcatcct 42




>RF00646;mir-204;AANH01011880.1/65628-65527 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 102

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                
Query: 9  catgtgacttgtgggcttccctttgtcatccttcgcct 46
          ||||||||  ||||| ||||||||||||||||| ||||
Sbjct: 11 catgtgacccgtgggtttccctttgtcatcctttgcct 48




>RF00646;mir-204;AAVX01164390.1/969-1070 7868:Callorhinchus milii
          (ghost shark)
          Length = 102

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 11 tgtgacttgtgggcttccctttgtcatcct 40
          |||||| |||||| ||||||||||||||||
Sbjct: 13 tgtgacctgtgggtttccctttgtcatcct 42