miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00130;mir-192;AY866319.1/760-864 9544:Macaca mulatta (rhesus
monkey)
Length = 105
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 4 attaagaaatggtatacaggaaaatgacctatgaattgacagacactatagctgagtttg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attaagaaatggtatacaggaaaatgacctatgaattgacagacactatagctgagtttg 60
Query: 64 tctgtcatttctttaggccaatattctgtatgactgtgctacttc 108
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctgtcatttctttaggccaatattctgtatgactgtgctacttc 105
>RF00130;mir-192;ABRO01051746.1/2172-2068 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 105
Score = 117 bits (59), Expect = 3e-26
Identities = 89/99 (89%)
Strand = Plus / Plus
Query: 10 aaatggtatacaggaaaatgacctatgaattgacagacactatagctgagtttgtctgtc 69
||||||| |||||||||||||||||||||||||||||| | | ||||| ||||||||||
Sbjct: 7 aaatggtgtacaggaaaatgacctatgaattgacagacgatgtggctgaatttgtctgtc 66
Query: 70 atttctttaggccaatattctgtatgactgtgctacttc 108
| |||| ||||||||||||||||||| || |||||||||
Sbjct: 67 acttctataggccaatattctgtatgtctctgctacttc 105
>RF00130;mir-192;AAIY01186786.1/2491-2595 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 105
Score = 115 bits (58), Expect = 1e-25
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 19 acaggaaaatgacctatgaattgacagacactatagctgagtttgtctgtcatttcttta 78
|||||||||||||||||||||||||||||| ||| || || ||||||||||||||| ||
Sbjct: 16 acaggaaaatgacctatgaattgacagacaatatggccaagcttgtctgtcatttctgta 75
Query: 79 ggccaatattctgtatgactgtgctacttc 108
||||||||||||||||| || |||||||||
Sbjct: 76 ggccaatattctgtatgtctctgctacttc 105
>RF00130;mir-192;ABRN01401597.1/3154-3052 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 103
Score = 111 bits (56), Expect = 2e-24
Identities = 80/87 (91%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 8 agaaatggtatacaggaaaatgacctatgaattgacagacactatagctgagtttgtctg 67
||||||||| ||||||||||||||||||||||||||||||| ||| | | |||||||||
Sbjct: 5 agaaatggtgtacaggaaaatgacctatgaattgacagacagtatggtt--gtttgtctg 62
Query: 68 tcatttctttaggccaatattctgtat 94
|||||||| ||||||||||||||||||
Sbjct: 63 tcatttctgtaggccaatattctgtat 89
>RF00130;mir-192;ABRT010021146.1/1809-1713 9478:Tarsius syrichta
(Philippine tarsier)
Length = 97
Score = 111 bits (56), Expect = 2e-24
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 25 aaatgacctatgaattgacagacactatagctgagtttgtctgtcatttctttaggccaa 84
|||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||
Sbjct: 14 aaatgacctatgaattgacagacaatatggctaagtttgtctgtcatttctataggccaa 73
Query: 85 tattctgtatgactgtgctacttc 108
||||||||||| || ||| |||||
Sbjct: 74 tattctgtatgtctctgccacttc 97
>RF00130;mir-192;AAGU02014260.1/2711-2609 9785:Loxodonta africana
(African savanna elephant)
Length = 103
Score = 111 bits (56), Expect = 2e-24
Identities = 80/88 (90%)
Strand = Plus / Plus
Query: 8 agaaatggtatacaggaaaatgacctatgaattgacagacactatagctgagtttgtctg 67
||||| ||| ||||||||||||||||||||| ||||||||| ||| ||| ||||||||||
Sbjct: 5 agaaacggtgtacaggaaaatgacctatgaactgacagacaatatggctaagtttgtctg 64
Query: 68 tcatttctttaggccaatattctgtatg 95
|||||||| |||||||| ||||||||||
Sbjct: 65 tcatttctgtaggccaacattctgtatg 92
>RF00130;mir-192;AANN01206173.1/3045-3149 9365:Erinaceus europaeus
(western European hedgehog)
Length = 105
Score = 109 bits (55), Expect = 8e-24
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 12 atggtatacaggaaaatgacctatgaattgacagacactatagctgagtttgtctgtcat 71
||||| ||||||||||||||||||||||||||||| | | | |||||| |||||||||||
Sbjct: 9 atggtgtacaggaaaatgacctatgaattgacagataatgtggctgagcttgtctgtcat 68
Query: 72 ttctttaggccaatattctgtat 94
|||| ||||||||||||||||||
Sbjct: 69 ttctgtaggccaatattctgtat 91
>RF00130;mir-192;AAEX02008010.1/236844-236948 9615:Canis lupus
familiaris (dog)
Length = 105
Score = 97.6 bits (49), Expect = 3e-20
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 10 aaatggtatacaggaaaatgacctatgaattgacagacactatagctgagtttgtctgtc 69
||||||| ||||||||||||||||| ||||||| ||||| | | ||| ||||||||||||
Sbjct: 7 aaatggtgtacaggaaaatgacctacgaattgatagacaatttggctaagtttgtctgtc 66
Query: 70 atttctttaggccaatattctgtat 94
|||| | ||||||||||||||||||
Sbjct: 67 atttttgtaggccaatattctgtat 91
>RF00130;mir-192;AAPY01700927.1/1101-997 37347:Tupaia belangeri
(northern tree shrew)
Length = 105
Score = 95.6 bits (48), Expect = 1e-19
Identities = 83/92 (90%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 4 attaagaaatggtatacaggaaaatgacctatgaattgacagacactatagctgagtt-t 62
||||| |||||||||||||||||||||||||||| |||||||||| | | ||| |||| |
Sbjct: 1 attaacaaatggtatacaggaaaatgacctatgacttgacagacaatgtggct-agttct 59
Query: 63 gtctgtcatttctttaggccaatattctgtat 94
|||||||||||| ||||||||||||||||||
Sbjct: 60 gtctgtcatttccgtaggccaatattctgtat 91
>RF00130;mir-192;AAPN01160419.1/4341-4444 9258:Ornithorhynchus
anatinus (platypus)
Length = 104
Score = 91.7 bits (46), Expect = 2e-18
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 7 aagaaatggtatacaggaaaatgacctatgaattgacagacactatagctgagtttgtct 66
|||||||||| ||||||||||||||||||||||||||||||| |||| | || ||||||
Sbjct: 4 aagaaatggtgtacaggaaaatgacctatgaattgacagacagtata-tttagattgtct 62
Query: 67 gtcatttctttaggccaa 84
||||||||| ||||||||
Sbjct: 63 gtcatttctgtaggccaa 80
>RF00130;mir-192;ABRP01022009.1/1654-1550 132908:Pteropus vampyrus
(large flying fox)
Length = 105
Score = 87.7 bits (44), Expect = 3e-17
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 19 acaggaaaatgacctatgaattgacagacactatagctgagtttgtctgtcatttcttta 78
|||||||||||||||||| || |||||||| ||||| |||| |||||||| ||||| ||
Sbjct: 16 acaggaaaatgacctatgcatcgacagacagtatagtcgagtgtgtctgtcgtttctata 75
Query: 79 ggccaatattctgtat 94
||||||||||||||||
Sbjct: 76 ggccaatattctgtat 91
>RF00130;mir-192;AAGW01566423.1/1450-1554 9986:Oryctolagus
cuniculus (rabbit)
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 8 agaaatggtatacaggaaaatgacctatgaattgacagacactatagctgagtttgtctg 67
|||| ||||||| |||||| ||||||||||| ||||||| ||| ||| | ||||||||
Sbjct: 5 agaattggtatataggaaattgacctatgaaatgacagatgatatggctaaatttgtctg 64
Query: 68 tcatttctttaggccaatattctgtat 94
|||||||| ||||||||||||||||||
Sbjct: 65 tcatttctgtaggccaatattctgtat 91
>RF00130;mir-192;AAFR03023364.1/184964-184859 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 106
Score = 81.8 bits (41), Expect = 2e-15
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 6 taagaaatggtatacaggaaaatgacctatgaattgacagacactatagct-gagtttgt 64
||||||||||| | |||||||||||||||||||||||||||| |||| | |||||||
Sbjct: 3 taagaaatggtgtgtaggaaaatgacctatgaattgacagacattatatttaaagtttgt 62
Query: 65 ctgtcatttctttaggccaat 85
||||||||||| |||||||||
Sbjct: 63 ctgtcatttctgtaggccaat 83
>RF00130;mir-192;AAQR01465597.1/732-628 30611:Otolemur garnettii
(small-eared galago)
Length = 105
Score = 79.8 bits (40), Expect = 7e-15
Identities = 82/96 (85%)
Strand = Plus / Plus
Query: 13 tggtatacaggaaaatgacctatgaattgacagacactatagctgagtttgtctgtcatt 72
|||||||||||||| |||||||| || ||||||| | || ||| |||||||||||||
Sbjct: 10 tggtatacaggaaattgacctataaactgacagataatacggctccatttgtctgtcatt 69
Query: 73 tctttaggccaatattctgtatgactgtgctacttc 108
||| ||||||||||||||| ||| || |||||||||
Sbjct: 70 tctgtaggccaatattctgcatgtctttgctacttc 105
>RF00130;mir-192;AAHX01077280.1/19936-20038 10116:Rattus
norvegicus (Norway rat)
Length = 103
Score = 75.8 bits (38), Expect = 1e-13
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 18 tacaggaaaatgacctatgaattgacagacactatagctgagtttgtctgtcatttcttt 77
||||||| |||||||||||| |||||||||| | | |||| || ||||||||| |||| |
Sbjct: 14 tacaggacaatgacctatgatttgacagacagtgtggctgcgtgtgtctgtca-ttctgt 72
Query: 78 aggccaatattctgtatg 95
||||||||||||||||||
Sbjct: 73 aggccaatattctgtatg 90
>RF00130;mir-192;AAHY01149687.1/2360-2462 10090:Mus musculus
(house mouse)
Length = 103
Score = 67.9 bits (34), Expect = 3e-11
Identities = 68/78 (87%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 18 tacaggaaaatgacctatgaattgacagacactatagctgagtttgtctgtcatttcttt 77
||||||| |||||||||||| ||||||||| | ||||| || ||||||||| |||| |
Sbjct: 14 tacaggagaatgacctatgatttgacagaccgtgcagctgtgtatgtctgtca-ttctgt 72
Query: 78 aggccaatattctgtatg 95
||||||||||||||||||
Sbjct: 73 aggccaatattctgtatg 90
>RF00130;mir-192;ABQF01123426.1/24360-24257 59729:Taeniopygia
guttata
Length = 104
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 6 taagaaatggtatacaggaaaatgacctatgaattgacagac 47
|||||| |||| | ||||||||||||||||||||||||||||
Sbjct: 3 taagaactggtgtccaggaaaatgacctatgaattgacagac 44
>RF00130;mir-192;AADN02012132.1/23656-23553 9031:Gallus gallus
(chicken)
Length = 104
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 6 taagaaatggtatacaggaaaatgacctatgaattgacagac 47
|||||| |||| | ||||||||||||||||||||||||||||
Sbjct: 3 taagaactggtgtccaggaaaatgacctatgaattgacagac 44
>RF00130;mir-192;AALT01482191.1/6358-6456 42254:Sorex araneus
(European shrew)
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 19 acaggaaaatgacctatgaattgacagaca 48
||||||| |||||||||||| |||||||||
Sbjct: 15 acaggaacatgacctatgaactgacagaca 44
