miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00255;mir-218;AADN02015265.1/7283-7378 9031:Gallus gallus
(chicken)
Length = 96
Score = 174 bits (88), Expect = 2e-43
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 8 tgtagcgagattttctgttgtgcttgatctaaccatgtggttgcgaggtatgagtaaaac 67
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tgtagcgagattttctgttgtgcttgatctaaccatgtggttgtgaggtatgagtaaaac 60
Query: 68 atggttccgtcaagcaccatggaacgtcacgcagct 103
||||||| ||||||||||||||||||||||||||||
Sbjct: 61 atggttctgtcaagcaccatggaacgtcacgcagct 96
>RF00255;mir-218;AAVX01277185.1/1303-1208 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 119 bits (60), Expect = 8e-27
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 11 agcgagattttctgttgtgcttgatctaaccatgtggttgcgaggtatgagtaaaacatg 70
|||| |||||| |||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 4 agcgggatttttcgttgtgcttgatctaaccatgtggttgcaaggtacgaataaaacatg 63
Query: 71 gttccgtcaagcaccatggaacgtcacg 98
|||| |||||||||||||||||||||||
Sbjct: 64 gttctgtcaagcaccatggaacgtcacg 91
>RF00255;mir-218;AAVX01056473.1/1147-1242 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 111 bits (56), Expect = 2e-24
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 12 gcgagattttctgttgtgcttgatctaaccatgtggttgcgaggtatgagtaaaacatgg 71
||||||| ||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct: 5 gcgagatgttctgttgtgcttgatctaaccatgtgcttccaaggtatgagtaaaacatgg 64
Query: 72 ttccgtcaagcaccatggaacgtc 95
|| |||||||||||||| |||||
Sbjct: 65 ttttgtcaagcaccatgggacgtc 88
>RF00255;mir-218;CU550699.5/12753-12848 7955:Danio rerio
(zebrafish)
Length = 96
Score = 61.9 bits (31), Expect = 2e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtggttgcgaggtatgagtaaaacatggttccgtcaagcac 84
||||||||||||||||||||||||||| | || ||| ||||||||| |||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggttgcagactcagactaatacatggttctgtcaagcac 77
Query: 85 catggaa 91
|||||||
Sbjct: 78 catggaa 84
>RF00255;mir-218;AANH01008177.1/992-1091 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 60 agtaaaacatggttccgtcaagcaccatggaacg 93
||||||||||||||| ||||||||||||||||||
Sbjct: 56 agtaaaacatggttctgtcaagcaccatggaacg 89
>RF00255;mir-218;BAAE01009772.1/4377-4476 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 56.0 bits (28), Expect = 1e-07
Identities = 62/73 (84%), Gaps = 4/73 (5%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtggttgcgaggt----atgagtaaaacatggttccgtcaa 80
||||||||||||||||||||||| ||| |||| | ||| |||||||||| |||||
Sbjct: 18 ttgtgcttgatctaaccatgtggctgccaggttcctaaaagtggaacatggttctgtcaa 77
Query: 81 gcaccatggaacg 93
|||||||||||||
Sbjct: 78 gcaccatggaacg 90
>RF00255;mir-218;CAAB01001792.1/26731-26830 31033:Takifugu
rubripes
Length = 100
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 aacatggttccgtcaagcaccatggaacg 93
|||||||||| ||||||||||||||||||
Sbjct: 61 aacatggttctgtcaagcaccatggaacg 89
>RF00255;mir-218;AAPN01020455.1/68716-68811 9258:Ornithorhynchus
anatinus (platypus)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtggt 48
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggt 41
>RF00255;mir-218;ABRQ01081918.1/2024-2119 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtggt 48
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggt 41
>RF00255;mir-218;AADN02035923.1/118816-118721 9031:Gallus gallus
(chicken)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtggt 48
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggt 41
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 aacatggttccgtcaagcaccatggaa 91
|||||||||| ||||||||||||||||
Sbjct: 58 aacatggttctgtcaagcaccatggaa 84
>RF00255;mir-218;ABRO01284271.1/1059-1152 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtgg 47
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;CAAB01001870.1/27610-27514 31033:Takifugu
rubripes
Length = 97
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtgg 47
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;BAAF04054903.1/5141-5043 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtgg 47
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;BX323583.36/54354-54450 7955:Danio rerio
(zebrafish)
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtg 46
||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtg 39
