miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00255;mir-218;ABRQ01081918.1/2024-2119 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 174 bits (88), Expect = 2e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 16 ggctttcctttgtgcttgatctaaccatgtggtggaacgatggaaacggaacatggttct 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ggctttcctttgtgcttgatctaaccatgtggtggaacgatggaaacggaacatggttct 68
Query: 76 gtcaagcaccgcggaaagcaccgtgctc 103
||||||||||||||||||||||||||||
Sbjct: 69 gtcaagcaccgcggaaagcaccgtgctc 96
>RF00255;mir-218;AAPN01020455.1/68716-68811 9258:Ornithorhynchus
anatinus (platypus)
Length = 96
Score = 117 bits (59), Expect = 3e-26
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 14 ggggctttcctttgtgcttgatctaaccatgtggtggaacgatggaaacggaacatggtt 73
|||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct: 7 ggggctttcctttgtgcttgatctaaccatgtggtggaacaatataaacagaacatggtt 66
Query: 74 ctgtcaagcaccgcggaaagcaccgtg 100
|||||||||||| ||||| || |||||
Sbjct: 67 ctgtcaagcaccacggaaggctccgtg 93
>RF00255;mir-218;AADN02035923.1/118816-118721 9031:Gallus gallus
(chicken)
Length = 96
Score = 87.7 bits (44), Expect = 3e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 14 ggggctttcctttgtgcttgatctaaccatgtggtggaacgatggaaacggaacatggtt 73
|||| |||||||||||||||||||||||||||||| |||| || ||| ||||||||||
Sbjct: 7 ggggttttcctttgtgcttgatctaaccatgtggtagaacaatacaaattgaacatggtt 66
Query: 74 ctgtcaagcacc 85
||||||||||||
Sbjct: 67 ctgtcaagcacc 78
>RF00255;mir-218;ABRO01284271.1/1059-1152 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 71.9 bits (36), Expect = 2e-12
Identities = 72/83 (86%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 12 gcggggctttcctttgtgcttgatctaaccatgtggtggaacgatggaaacggaacatgg 71
||||||| |||| |||||||||||||||||||||| | | | || ||||| |||||||
Sbjct: 5 gcggggccttcccttgtgcttgatctaaccatgtg--gcagctctgcaaacgaaacatgg 62
Query: 72 ttctgtcaagcaccgcggaaagc 94
||||||||||||||| |||||||
Sbjct: 63 ttctgtcaagcaccgaggaaagc 85
>RF00255;mir-218;CU550699.5/12753-12848 7955:Danio rerio
(zebrafish)
Length = 96
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 12 gcggggctttcctttgtgcttgatctaaccatgtggt 48
|||||| ||||||||||||||||||||||||||||||
Sbjct: 5 gcggggttttcctttgtgcttgatctaaccatgtggt 41
>RF00255;mir-218;CAAB01001792.1/26731-26830 31033:Takifugu
rubripes
Length = 100
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 20 ttcctttgtgcttgatctaaccatgtgg 47
||||||||||||||||||||||||||||
Sbjct: 13 ttcctttgtgcttgatctaaccatgtgg 40
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 ggaacatggttctgtcaagcacc 85
|||||||||||||||||||||||
Sbjct: 59 ggaacatggttctgtcaagcacc 81
>RF00255;mir-218;BAAE01009772.1/4377-4476 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 20 ttcctttgtgcttgatctaaccatgtgg 47
||||||||||||||||||||||||||||
Sbjct: 13 ttcctttgtgcttgatctaaccatgtgg 40
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 ggaacatggttctgtcaagcacc 85
|||||||||||||||||||||||
Sbjct: 60 ggaacatggttctgtcaagcacc 82
>RF00255;mir-218;AANH01008177.1/992-1091 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 20 ttcctttgtgcttgatctaaccatgtg 46
|||||||||||||||||||||||||||
Sbjct: 13 ttcctttgtgcttgatctaaccatgtg 39
>RF00255;mir-218;AADN02015265.1/7283-7378 9031:Gallus gallus
(chicken)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtggt 48
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggt 41
>RF00255;mir-218;AAVX01277185.1/1303-1208 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtggt 48
||||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtggt 41
>RF00255;mir-218;CAAB01001870.1/27610-27514 31033:Takifugu
rubripes
Length = 97
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtgg 47
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;BAAF04054903.1/5141-5043 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtgg 47
|||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtgg 40
>RF00255;mir-218;BX323583.36/54354-54450 7955:Danio rerio
(zebrafish)
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtg 46
||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtg 39
>RF00255;mir-218;AAVX01056473.1/1147-1242 7868:Callorhinchus milii
(ghost shark)
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 25 ttgtgcttgatctaaccatgtg 46
||||||||||||||||||||||
Sbjct: 18 ttgtgcttgatctaaccatgtg 39
