miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana (thale
           cress)
          Length = 136

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 73  tggaagctcaagaaagctgtgggaaaacatg 103
           |||||||||||||||||||||||||||||||
Sbjct: 102 tggaagctcaagaaagctgtgggaaaacatg 132



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 1  gtcatgctattccacagctttcttgaactttctt 34
          ||||| || |||||||||||||||||||||||||
Sbjct: 2  gtcatacttttccacagctttcttgaactttctt 35




>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
           trichocarpa
          Length = 148

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 71  catggaagctcaagaaagctgtgggaaaacatgg 104
           |||||||||||||||||||||||||| |||||||
Sbjct: 112 catggaagctcaagaaagctgtgggagaacatgg 145



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  gtcatgctattccacagctttcttgaactt 30
          |||||||| |||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaactt 31




>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
          trichocarpa
          Length = 157

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 1  gtcatgctattccacagctttcttgaactttcttg 35
          |||||||| ||||||||||||||||||||| ||||
Sbjct: 2  gtcatgcttttccacagctttcttgaacttccttg 36



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 71  catggaagctcaagaaagctgtgggaaaacatgg 104
           ||||||||||||||||||| |||||| |||||||
Sbjct: 121 catggaagctcaagaaagccgtgggagaacatgg 154




>RF00648;MIR396;CAAP02000221.1/3577-3471 29760:Vitis vinifera
          Length = 107

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 78  gctcaagaaagctgtgggaaaacatgg 104
           |||||||||||||||||||||||||||
Sbjct: 78  gctcaagaaagctgtgggaaaacatgg 104




>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
          trichocarpa
          Length = 105

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  gtcatgctattccacagctttcttgaactt 30
          ||||||||||||||| ||||||||||||||
Sbjct: 2  gtcatgctattccacggctttcttgaactt 31



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 74  ggaagctcaagaaagctgtgggaaaacatgg 104
           ||||| ||||||||||||||| |||||||||
Sbjct: 72  ggaagttcaagaaagctgtggaaaaacatgg 102




>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
          (castor bean)
          Length = 133

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  gtcatgctattccacagctttcttgaactt 30
          |||||||| |||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaactt 31




>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
          (barrel medic)
          Length = 104

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  gtcatgctattccacagctttcttgaactt 30
          |||||||| |||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 75 gaagctcaagaaagctgtggga 96
          ||||||||||||||||||||||
Sbjct: 72 gaagctcaagaaagctgtggga 93




>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
          Length = 108

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  gtcatgctattccacagctttcttgaactt 30
          |||||||| |||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 75  gaagctcaagaaagctgtgggaaaacatgg 104
           ||||||||||||||| ||||||||| ||||
Sbjct: 76  gaagctcaagaaagccgtgggaaaatatgg 105




>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
          Length = 113

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 1  gtcatgctattccacagctttcttgaact 29
          |||||||| ||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaact 30



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 75  gaagctcaagaaagctgtggga 96
           ||||||||||||||||||||||
Sbjct: 81  gaagctcaagaaagctgtggga 102




>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
          Length = 87

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 76  aagctcaagaaagctgtgggaaaacatgg 104
           ||||||||||||| |||||||||||||||
Sbjct: 56  aagctcaagaaagttgtgggaaaacatgg 84




>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
          Length = 105

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 3  catgctattccacagctttcttgaactt 30
          |||||| |||||||||||||||||||||
Sbjct: 4  catgcttttccacagctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 75  gaagctcaagaaagctgtgggaaaacatgg 104
           |||| ||||||||||||||||||| |||||
Sbjct: 73  gaagttcaagaaagctgtgggaaaccatgg 102




>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
          pine)
          Length = 108

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  gtcatgctattccacagctttcttgaacttt 31
          ||||| || ||||||||||||||||||||||
Sbjct: 2  gtcatacttttccacagctttcttgaacttt 32




>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
          (papaya)
          Length = 159

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 1  gtcatgctattccacagctttcttgaactt 30
          |||||| | |||||||||||||||||||||
Sbjct: 2  gtcatgtttttccacagctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 75  gaagctcaagaaagctgtggga 96
           ||||||||||||||||||||||
Sbjct: 127 gaagctcaagaaagctgtggga 148