miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
           (thale cress)
          Length = 152

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 102 gatttgcggttcaataaagctgtgggaagatacagaca 139
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gatttgcggttcaataaagctgtgggaagatacagaca 152



 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 22 tgtattcttccacagctttcttgaactgca 51
          ||||||||||||||||||||||||||||||
Sbjct: 4  tgtattcttccacagctttcttgaactgca 33




>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
          trichocarpa
          Length = 135

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                      
Query: 19 ctttgtattcttccacagctttcttgaactgcatctcttagatt 62
          ||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcacctattagatt 44



 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 106 tgcggttcaataaagctgtgggaagataca 135
           ||||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagataca 131




>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis
          (castor bean)
          Length = 166

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 19 ctttgtattcttccacagctttcttgaactgcatct 54
          ||||||||||||||||||||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcatct 36



 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 104 tttgcggttcaataaagctgtgggaagatac 134
           |||||||||||||||||||||||||||||||
Sbjct: 131 tttgcggttcaataaagctgtgggaagatac 161




>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
          (barrel medic)
          Length = 106

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 19 ctttgtattcttccacagctttcttgaactgcatc 53
          |||||||||||||||||||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcatc 35



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 104 tttgcggttcaataaagctgtgggaagatacaga 137
           ||||||||||||||||||||||||||||||||||
Sbjct: 71  tttgcggttcaataaagctgtgggaagatacaga 104




>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
          Length = 100

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 19 ctttgtattcttccacagctttcttgaactgcatc 53
          |||||||||||||||||||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcatc 35



 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 104 tttgcggttcaataaagctgtgggaagata 133
           ||||||||||||||||||||||||||||||
Sbjct: 65  tttgcggttcaataaagctgtgggaagata 94




>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
          Length = 119

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 19 ctttgtattcttccacagctttcttgaactgcat 52
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcat 34



 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 105 ttgcggttcaataaagctgtgggaagatac 134
           ||||||||||||||||||||||||||||||
Sbjct: 85  ttgcggttcaataaagctgtgggaagatac 114




>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
          (papaya)
          Length = 101

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 20 tttgtattcttccacagctttcttgaactgcat 52
          |||||||||||||||||||||||||||||||||
Sbjct: 2  tttgtattcttccacagctttcttgaactgcat 34



 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 105 ttgcggttcaataaagctgtgggaagatacag 136
           ||||||||||||||||||||||||||||||||
Sbjct: 67  ttgcggttcaataaagctgtgggaagatacag 98




>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus trichocarpa
          Length = 126

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 105 ttgcggttcaataaagctgtgggaagataca 135
           |||||||||||||||||||||||||||||||
Sbjct: 92  ttgcggttcaataaagctgtgggaagataca 122



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 23 gtattcttccacagctttcttgaactgca 51
          |||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33




>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
          (sorghum)
          Length = 110

 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 27 tcttccacagctttcttgaactgcatctct 56
          ||||||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcatctct 38




>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
          Indica Group
          Length = 117

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 27 tcttccacagctttcttgaactgcatct 54
          ||||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcatct 36




>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
          Length = 119

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 27 tcttccacagctttcttgaactgcat 52
          ||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcat 34




>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
          (sorghum)
          Length = 107

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 27 tcttccacagctttcttgaactgcat 52
          ||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcat 34




>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa
          Japonica Group
          Length = 155

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 27 tcttccacagctttcttgaactgca 51
          |||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgca 33




>RF00648;MIR396;ABIM01023164.1/6366-6248 3649:Carica papaya
          (papaya)
          Length = 119

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 27 tcttccacagctttcttgaactg 49
          |||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactg 31




>RF00648;MIR396;AASG02002614.1/17574-17698 3988:Ricinus communis
          (castor bean)
          Length = 125

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 27 tcttccacagctttcttgaactg 49
          |||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactg 31




>RF00648;MIR396;CAAP02002594.1/43203-43097 29760:Vitis vinifera
          Length = 107

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 27 tcttccacagctttcttgaactg 49
          |||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactg 31