miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
          Length = 194

 Score = 63.9 bits (32), Expect = 9e-10
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                      
Query: 34 gagctccttgaagtccaatagaggatctgagtgggaagatagtgctgctggcttatggat 93
          |||||||||||||||||||||||| ||| | |||| |||| | ||||||| |||||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 72



 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 182 ggattgaagggagctctacacc 203
           ||||||||||||||||||||||
Sbjct: 165 ggattgaagggagctctacacc 186




>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
          (papaya)
          Length = 194

 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 31 gtagagctccttgaagtccaatagaggat 59
          |||||||||||||||||||||||||||||
Sbjct: 10 gtagagctccttgaagtccaatagaggat 38



 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 182 ggattgaagggagctctacacc 203
           ||||||||||||||||||||||
Sbjct: 165 ggattgaagggagctctacacc 186




>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
          (castor bean)
          Length = 194

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 34 gagctccttgaagtccaatagaggatct 61
          ||||||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggatct 40



 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 43/48 (89%), Gaps = 1/48 (2%)
 Strand = Plus / Plus

                                                           
Query: 116 ttttgtataggctttgtggcttgcataacccaggagctttattacctt 163
           ||||| |||||||| |||||||||||| | ||||||||| ||||||||
Sbjct: 101 ttttggataggctt-gtggcttgcatatctcaggagcttcattacctt 147




>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
          Length = 186

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 34 gagctccttgaagtccaatagagg 57
          ||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagagg 36




>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
          Length = 165

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 34 gagctccttgaagtccaataga 55
          ||||||||||||||||||||||
Sbjct: 1  gagctccttgaagtccaataga 22



 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 133 ggcttgcataacccaggagctttattacct 162
           |||||||||| | |||||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagctttattacct 130




>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
          Length = 200

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                      
Query: 34 gagctccttgaagtccaatagaggatctgagtgggaagatagtgctgctggcttatggat 93
          |||||||||||||||||| ||| ||||| |  ||  |||| | ||||||| | |||||||
Sbjct: 13 gagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatggat 72

                
Query: 94 tcctca 99
          ||||||
Sbjct: 73 tcctca 78




>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
          Length = 190

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 182 ggattgaagggagctctacacc 203
           ||||||||||||||||||||||
Sbjct: 161 ggattgaagggagctctacacc 182