miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
           (barrel medic)
          Length = 123

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 104 tcatgcactgcctcttccctggct 127
           ||||||||||||||||||||||||
Sbjct: 82  tcatgcactgcctcttccctggct 105




>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
          Length = 156

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 104 tcatgcactgcctcttccctggct 127
           ||||||||||||||||||||||||
Sbjct: 116 tcatgcactgcctcttccctggct 139




>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
           cress)
          Length = 126

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 105 catgcactgcctcttccctggct 127
           |||||||||||||||||||||||
Sbjct: 86  catgcactgcctcttccctggct 108




>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
          Length = 119

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 105 catgcactgcctcttccctggct 127
           |||||||||||||||||||||||
Sbjct: 79  catgcactgcctcttccctggct 101




>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
          Length = 137

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 104 tcatgcactgcctcttccctggc 126
           |||||||||||||||||||||||
Sbjct: 96  tcatgcactgcctcttccctggc 118




>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
          Length = 125

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 105 catgcactgcctcttccctggct 127
           |||||||||||||||||||||||
Sbjct: 86  catgcactgcctcttccctggct 108