miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;AACY021059370.1/94-20 408172:marine metagenome
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 36 tcatcgtcatcgtcatcatcatca 59
||||||||||||||||||||||||
Sbjct: 30 tcatcgtcatcgtcatcatcatca 7
>RF01059;mir-598;AASC02030034.1/207-302 6500:Aplysia californica
(California sea hare)
Length = 96
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 36 tcatcgtcatcgtcatcatcatca 59
||||||||||||||||||||||||
Sbjct: 30 tcatcgtcatcgtcatcatcatca 7
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 36 tcatcgtcatcgtcatcatcatca 59
||||||||||||||||||||||||
Sbjct: 51 tcatcgtcatcgtcatcatcatca 28
>RF01059;mir-598;AASC02014353.1/13263-13358 6500:Aplysia
californica (California sea hare)
Length = 96
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 36 tcatcgtcatcgtcatcatcatca 59
||||||||||||||||||||||||
Sbjct: 66 tcatcgtcatcgtcatcatcatca 43
>RF01059;mir-598;AASC02010496.1/2194-2290 6500:Aplysia californica
(California sea hare)
Length = 97
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 36 tcatcgtcatcgtcatcatcatca 59
||||||||||||||||||||||||
Sbjct: 42 tcatcgtcatcgtcatcatcatca 19
>RF01059;mir-598;AASC02042577.1/5304-5401 6500:Aplysia californica
(California sea hare)
Length = 98
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 36 tcatcgtcatcgtcatcatcatca 59
||||||||||||||||||||||||
Sbjct: 42 tcatcgtcatcgtcatcatcatca 19
>RF01059;mir-598;AAHY01469015.1/759-665 10090:Mus musculus (house
mouse)
Length = 95
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 tcatcgtcatcgtcatcatcatca 59
||||||||||||||||||||||||
Sbjct: 57 tcatcgtcatcgtcatcatcatca 80
>RF01059;mir-598;AAPO01000014.1/120430-120523 379508:Lodderomyces
elongisporus NRRL YB-4239
Length = 94
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 36 tcatcgtcatcgtcatcatcatca 59
||||||||||||||||||||||||
Sbjct: 24 tcatcgtcatcgtcatcatcatca 1
>RF01059;mir-598;AACY020757299.1/526-403 408172:marine metagenome
Length = 124
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 36 tcatcgtcatcgtcatcatcatc 58
|||||||||||||||||||||||
Sbjct: 101 tcatcgtcatcgtcatcatcatc 123
>RF01059;mir-598;AANI01016597.1/18315-18448 7244:Drosophila
virilis
Length = 134
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 37 catcgtcatcgtcatcatcatca 59
|||||||||||||||||||||||
Sbjct: 47 catcgtcatcgtcatcatcatca 25
>RF01059;mir-598;AAWR02035773.1/10657-10711 9796:Equus caballus
(horse)
Length = 55
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 34 gctcatcgtcatcgtcatcatcatca 59
||||||||||||| ||||||||||||
Sbjct: 32 gctcatcgtcatcatcatcatcatca 7
>RF01059;mir-598;AAWZ01000888.1/17004-17090 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 tcatcgtcatcgtcatcatcat 57
||||||||||||||||||||||
Sbjct: 58 tcatcgtcatcgtcatcatcat 79
>RF01059;mir-598;ABJB010111346.1/399-497 6945:Ixodes scapularis
(black-legged tick)
Length = 99
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 35 ctcatcgtcatcgtcatcatca 56
||||||||||||||||||||||
Sbjct: 22 ctcatcgtcatcgtcatcatca 1
>RF01059;mir-598;AC171131.2/41715-41578 6412:Helobdella robusta
Length = 138
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 atcgtcatcgtcatcatcatca 59
||||||||||||||||||||||
Sbjct: 117 atcgtcatcgtcatcatcatca 138
>RF01059;mir-598;AASC02022010.1/15659-15564 6500:Aplysia
californica (California sea hare)
Length = 96
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 35 ctcatcgtcatcgtcatcatcatca 59
|||||| ||||||||||||||||||
Sbjct: 25 ctcatcatcatcgtcatcatcatca 1
>RF01059;mir-598;AASC02035376.1/2073-1998 6500:Aplysia californica
(California sea hare)
Length = 76
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 35 ctcatcgtcatcgtcatcatcatca 59
|||||||||||| ||||||||||||
Sbjct: 40 ctcatcgtcatcatcatcatcatca 16
>RF01059;mir-598;AAWZ01016740.1/65861-65944 28377:Anolis
carolinensis (green anole)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 39 tcgtcatcgtcatcatcatca 59
|||||||||||||||||||||
Sbjct: 33 tcgtcatcgtcatcatcatca 13
>RF01059;mir-598;AAZO01000954.1/19365-19502 121224:Pediculus
humanus corporis (human body louse)
Length = 138
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 35 ctcatcgtcatcgtcatcatcatca 59
|||||||||||| ||||||||||||
Sbjct: 34 ctcatcgtcatcatcatcatcatca 10
>RF01059;mir-598;AAPT01021434.1/2826-2931 7222:Drosophila
grimshawi
Length = 106
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 39 tcgtcatcgtcatcatcatca 59
|||||||||||||||||||||
Sbjct: 42 tcgtcatcgtcatcatcatca 22
>RF01059;mir-598;ABJB010171605.1/604-526 6945:Ixodes scapularis
(black-legged tick)
Length = 79
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 36 tcatcgtcatcgtcatcatca 56
|||||||||||||||||||||
Sbjct: 56 tcatcgtcatcgtcatcatca 76
>RF01059;mir-598;ABJB010481179.1/3277-3189 6945:Ixodes scapularis
(black-legged tick)
Length = 89
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 36 tcatcgtcatcgtcatcatca 56
|||||||||||||||||||||
Sbjct: 51 tcatcgtcatcgtcatcatca 31
>RF01059;mir-598;AC115598.2/34724-34823 44689:Dictyostelium
discoideum
Length = 100
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 tcgtcatcgtcatcatcatca 59
|||||||||||||||||||||
Sbjct: 71 tcgtcatcgtcatcatcatca 91
