miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
          Length = 86

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 77/87 (88%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 atatgcctggctccctgtatgccatttccagagcccaccagtatcaccggtgacctccgt 70
          ||||||||||||||||||||||||||| ||||||||||| | | || || || ||| |||
Sbjct: 1  atatgcctggctccctgtatgccatttgcagagcccaccggca-catcgatggccttcgt 59

                                     
Query: 71 gaatggcgtatgaggagccaagcatat 97
          | |||||||||||||||||| ||||||
Sbjct: 60 ggatggcgtatgaggagccatgcatat 86




>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
          (papaya)
          Length = 85

 Score = 79.8 bits (40), Expect = 6e-15
 Identities = 73/83 (87%), Gaps = 2/83 (2%)
 Strand = Plus / Plus

                                                                      
Query: 14 tgcctggctccctgtatgccatttccagagcccaccagtatcaccggtgacctccgtgaa 73
          |||||||||||||||||||||||| |||||||||||   | || || || |||||||| |
Sbjct: 4  tgcctggctccctgtatgccatttgcagagcccacc--gagcatcgctggcctccgtgga 61

                                 
Query: 74 tggcgtatgaggagccaagcata 96
          ||||||||||||||||| |||||
Sbjct: 62 tggcgtatgaggagccatgcata 84




>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
          trichocarpa
          Length = 86

 Score = 79.8 bits (40), Expect = 6e-15
 Identities = 74/84 (88%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                      
Query: 14 tgcctggctccctgtatgccatttccagagcccaccagtatcaccggtgacctccgtgaa 73
          |||||||||||||||||||||||| ||||||||| | | |||  || || |||||||| |
Sbjct: 4  tgcctggctccctgtatgccatttgcagagcccaac-ggatcctcgatggcctccgtgga 62

                                  
Query: 74 tggcgtatgaggagccaagcatat 97
          ||||||||||||||||| ||||||
Sbjct: 63 tggcgtatgaggagccatgcatat 86




>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
          (thale cress)
          Length = 85

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 76/87 (87%), Gaps = 4/87 (4%)
 Strand = Plus / Plus

                                                                      
Query: 12 tatgcctggctccctgtatgccatttccagagcccacc-agtatcaccggtgacctccgt 70
          |||||||||||||||||||||||| | | ||||||| | ||||||   | ||||||||||
Sbjct: 2  tatgcctggctccctgtatgccatatgctgagcccatcgagtatc---gatgacctccgt 58

                                     
Query: 71 gaatggcgtatgaggagccaagcatat 97
          | |||||||||||||||||| ||||||
Sbjct: 59 ggatggcgtatgaggagccatgcatat 85




>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
          Length = 89

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 70 tgaatggcgtatgaggagccaagcatat 97
          ||||||||||||||||||||||||||||
Sbjct: 62 tgaatggcgtatgaggagccaagcatat 89



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 11 atatgcctggctccctgtatgccattt 37
          |||||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgccattt 27




>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
          (barrel medic)
          Length = 86

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 73 atggcgtatgaggagccaagcatat 97
          |||||||||||||||||||||||||
Sbjct: 62 atggcgtatgaggagccaagcatat 86



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tgcctggctccctgtatgccat 35
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccat 25




>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
          Length = 86

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 73 atggcgtatgaggagccaagcatat 97
          |||||||||||||||||||||||||
Sbjct: 62 atggcgtatgaggagccaagcatat 86



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 tgcctggctccctgtatgccattt 37
          ||||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccattt 27




>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
          Length = 86

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 13 atgcctggctccctgtatgccattt 37
          |||||||||||||||||||||||||
Sbjct: 3  atgcctggctccctgtatgccattt 27




>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
          (castor bean)
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 tgcctggctccctgtatgccattt 37
          ||||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccattt 27




>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
          (barrel medic)
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 tgcctggctccctgtatgccattt 37
          ||||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccattt 27




>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
          Length = 85

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 atatgcctggctccctgtatgcca 34
          ||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgcca 24




>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
          (sorghum)
          Length = 106

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 atatgcctggctccctgtatgcca 34
          ||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgcca 24




>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
          (sorghum)
          Length = 101

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 atatgcctggctccctgtatgcca 34
          ||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgcca 24




>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
          Indica Group
          Length = 136

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 atatgcctggctccctgtatgcca 34
          ||||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgcca 24




>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
          (papaya)
          Length = 86

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 13 atgcctggctccctgtatgccat 35
          |||||||||||||||||||||||
Sbjct: 3  atgcctggctccctgtatgccat 25




>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
          (papaya)
          Length = 88

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 tatgcctggctccctgtatgcca 34
          |||||||||||||||||||||||
Sbjct: 2  tatgcctggctccctgtatgcca 24




>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
          (thale cress)
          Length = 87

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 tatgcctggctccctgtatgcca 34
          |||||||||||||||||||||||
Sbjct: 2  tatgcctggctccctgtatgcca 24




>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
          trichocarpa
          Length = 90

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 tatgcctggctccctgtatgcca 34
          |||||||||||||||||||||||
Sbjct: 2  tatgcctggctccctgtatgcca 24




>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
          Length = 89

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 tatgcctggctccctgtatgcca 34
          |||||||||||||||||||||||
Sbjct: 1  tatgcctggctccctgtatgcca 23




>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
          (castor bean)
          Length = 90

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 tatgcctggctccctgtatgcca 34
          |||||||||||||||||||||||
Sbjct: 2  tatgcctggctccctgtatgcca 24




>RF00247;mir-160;AY551220.1/23-122 4530:Oryza sativa (rice)
          Length = 100

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 atatgcctggctccctgtatgcc 33
          |||||||||||||||||||||||
Sbjct: 1  atatgcctggctccctgtatgcc 23




>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
          pekinensis
          Length = 88

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 13 atgcctggctccctgtatgcca 34
          ||||||||||||||||||||||
Sbjct: 3  atgcctggctccctgtatgcca 24




>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
          Length = 87

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 13 atgcctggctccctgtatgcca 34
          ||||||||||||||||||||||
Sbjct: 3  atgcctggctccctgtatgcca 24