miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
          (castor bean)
          Length = 343

 Score = 61.9 bits (31), Expect = 4e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 14 tgagagattgaagctgccagcatgatctgataatg 48
          ||||||||||||||||||||||||||||| |||||
Sbjct: 6  tgagagattgaagctgccagcatgatctggtaatg 40




>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
          trichocarpa
          Length = 435

 Score = 54.0 bits (27), Expect = 9e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 14 tgagagattgaagctgccagcatgatctgataatg 48
          |||||| |||||||||||||||||||||| |||||
Sbjct: 6  tgagaggttgaagctgccagcatgatctggtaatg 40




>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
          Length = 436

 Score = 54.0 bits (27), Expect = 9e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 14 tgagagattgaagctgccagcatgatctgataatg 48
          |||||| |||||||||||||||||||||| |||||
Sbjct: 6  tgagaggttgaagctgccagcatgatctggtaatg 40




>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
          Length = 154

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 14 tgagagattgaagctgccagcatgatctgataat 47
          |||||| |||||||||||||||||||||| ||||
Sbjct: 6  tgagaggttgaagctgccagcatgatctggtaat 39




>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
          bicolor (sorghum)
          Length = 265

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 14 tgagagattgaagctgccagcatgatctga 43
          |||||| |||||||||||||||||||||||
Sbjct: 6  tgagaggttgaagctgccagcatgatctga 35




>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
          Length = 354

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 14 tgagagattgaagctgccagcatgatctg 42
          |||||| ||||||||||||||||||||||
Sbjct: 6  tgagaggttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
          Length = 116

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 14 tgagagattgaagctgccagcatgatctg 42
          |||||| ||||||||||||||||||||||
Sbjct: 6  tgagagcttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
          (sorghum)
          Length = 118

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 14 tgagagattgaagctgccagcatgatctg 42
          |||||| ||||||||||||||||||||||
Sbjct: 6  tgagaggttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
          Japonica Group
          Length = 278

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 14 tgagagattgaagctgccagcatgatctg 42
          ||||||| |||||||||||||||||||||
Sbjct: 6  tgagagaatgaagctgccagcatgatctg 34




>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
          (papaya)
          Length = 103

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 ttgaagctgccagcatgatctga 43
          |||||||||||||||||||||||
Sbjct: 13 ttgaagctgccagcatgatctga 35




>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
          trichocarpa
          Length = 98

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 21 ttgaagctgccagcatgatctga 43
          |||||||||||||||||||||||
Sbjct: 13 ttgaagctgccagcatgatctga 35




>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
          (sorghum)
          Length = 109

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 tgaagctgccagcatgatctgat 44
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36




>RF00640;MIR167_1;ABXC01005647.1/68869-69033 4558:Sorghum bicolor
          (sorghum)
          Length = 165

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 tgaagctgccagcatgatctgat 44
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36




>RF00640;MIR167_1;ABXC01000844.1/72139-72006 4558:Sorghum bicolor
          (sorghum)
          Length = 134

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 tgaagctgccagcatgatctgat 44
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36




>RF00640;MIR167_1;AP003800.3/19613-19499 39947:Oryza sativa
          Japonica Group
          Length = 115

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 tgaagctgccagcatgatctgat 44
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36




>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
          Length = 118

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 tgaagctgccagcatgatctgat 44
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36




>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica
          Group
          Length = 125

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 tgaagctgccagcatgatctgat 44
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36




>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
          Indica Group
          Length = 129

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 tgaagctgccagcatgatctgat 44
          |||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36




>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
          (thale cress)
          Length = 365

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 22 tgaagctgccagcatgatctgataat 47
          ||||||||||||||||||||| ||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39




>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
          (thale cress)
          Length = 387

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 22 tgaagctgccagcatgatctgataat 47
          ||||||||||||||||||||| ||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39




>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
          (thale cress)
          Length = 367

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 22 tgaagctgccagcatgatctgataat 47
          ||||||||||||||||||||| ||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39




>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
          (castor bean)
          Length = 89

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 21 ttgaagctgccagcatgatctg 42
          ||||||||||||||||||||||
Sbjct: 13 ttgaagctgccagcatgatctg 34




>RF00640;MIR167_1;ABXC01000326.1/41757-41921 4558:Sorghum bicolor
          (sorghum)
          Length = 165

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tgaagctgccagcatgatctga 43
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35




>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
          bicolor (sorghum)
          Length = 113

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tgaagctgccagcatgatctga 43
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35




>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
          (African rice)
          Length = 87

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tgaagctgccagcatgatctga 43
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35