miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00879;mir-615;ABRQ01001814.1/3563-3468 9813:Procavia capensis
(cape rock hyrax)
Length = 96
Score = 163 bits (82), Expect = 5e-40
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 61
Query: 61 ccgagcctgggtctccctcttccccc 86
|||||||||||||||||||| |||||
Sbjct: 62 ccgagcctgggtctccctctcccccc 87
>RF00879;mir-615;AAYZ01058781.1/113-208 9978:Ochotona princeps
(American pika)
Length = 96
Score = 109 bits (55), Expect = 6e-24
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 1 tcgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggt 60
||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 2 tcgggaggggcgggaggggggtccccggtgcccggacctcgagggtgctggccgttcggt 61
Query: 61 ccgagcctgggtctccctcttcc 83
||||||||||||||| |||||||
Sbjct: 62 ccgagcctgggtctcactcttcc 84
>RF00879;mir-615;AANN01223825.1/45-138 9365:Erinaceus europaeus
(western European hedgehog)
Length = 94
Score = 79.8 bits (40), Expect = 6e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 2 cgggaggggcgggaggggggtccccggtgctcggatctcgagggtgcttattgttcggtc 61
||||| ||| || |||||| |||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 3 cgggaagggtggaagggggttccctggtgcacggatctcgagggtgctcattgttcggtt 62
Query: 62 cgagcctgggtctccc 77
|||||||||||||||
Sbjct: 63 tgagcctgggtctccc 78
