miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01953;SOX2OT_exon3;CAAA01020221.1/12622-12351 10090:Mus musculus
(house mouse)
Length = 272
Score = 157 bits (79), Expect = 2e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 attctccgtgctttggatggagaaagaggggggaagtgcgagctccttcaactcgttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 attctccgtgctttggatggagaaagaggggggaagtgcgagctccttcaactcgttctg 156
Query: 61 tccggtgaggagtgatcca 79
|||||||||||||||||||
Sbjct: 157 tccggtgaggagtgatcca 175
>RF01953;SOX2OT_exon3;AAGW01509002.1/5382-5656 9986:Oryctolagus
cuniculus (rabbit)
Length = 275
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 8 gtgctttggatggagaaagaggggggaagtgcgagctccttcaactcgttctgtccggtg 67
|||| |||||||||| | ||| |||||| || |||||||||||||| ||||||||||||
Sbjct: 105 gtgccttggatggaggatgagaggggaacggcaagctccttcaactcattctgtccggtg 164
Query: 68 aggagtgatc 77
|| |||||||
Sbjct: 165 agaagtgatc 174
>RF01953;SOX2OT_exon3;AAFR03036275.1/12069-11825 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 245
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 40 gagctccttcaactcgttctgtccggtgaggagtga 75
|||||||||||||||| |||||||||||| |||||
Sbjct: 106 gagctccttcaactcgcgctgtccggtgagaagtga 141
>RF01953;SOX2OT_exon3;AAGU02031917.1/16798-17072 9785:Loxodonta
africana (African savanna elephant)
Length = 275
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 42 gctccttcaactcgttctgtccggtgaggagtgatc 77
||||||||| |||||||||||| ||||| |||||||
Sbjct: 140 gctccttcagctcgttctgtcccgtgagaagtgatc 175
