miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00651;mir-221;BAAE01085056.1/1241-1173 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 99.6 bits (50), Expect = 5e-21
Identities = 65/69 (94%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 1 cctgaacctggcatacaatgtagatttctgtgtgcttggattctacagctacattgtctg 60
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1 cctgaacctggcatacaatgtagatttctgtgt--ttcaattctacagctacattgtctg 58
Query: 61 ctgggtttc 69
|||||||||
Sbjct: 59 ctgggtttc 67
>RF00651;mir-221;AADN02010981.1/2588-2657 9031:Gallus gallus
(chicken)
Length = 70
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/69 (89%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgtgtgcttg-gattctacagctacattgtctgc 61
||||||||||||||||||||||||||||||| ||| | | |||||||||||||||||
Sbjct: 3 tgaacctggcatacaatgtagatttctgtgt--ttgttaagcaacagctacattgtctgc 60
Query: 62 tgggtttcc 70
|||||||||
Sbjct: 61 tgggtttcc 69
>RF00651;mir-221;AAYZ01618848.1/488-419 9978:Ochotona princeps
(American pika)
Length = 70
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgt 31
|||||||||||||||||||||||||||||
Sbjct: 3 tgaacctggcatacaatgtagatttctgt 31
>RF00651;mir-221;CU550700.7/20157-20229 7955:Danio rerio
(zebrafish)
Length = 73
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tctacagctacattgtctgctgggtttc 69
||||||||||||||||||||||||||||
Sbjct: 44 tctacagctacattgtctgctgggtttc 71
>RF00651;mir-221;BAAE01342535.1/103-172 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 tctacagctacattgtctgctgggtttc 69
||||||||||||||||||||||||||||
Sbjct: 41 tctacagctacattgtctgctgggtttc 68
>RF00651;mir-221;AALT01657316.1/439-370 42254:Sorex araneus
(European shrew)
Length = 70
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgaacctggcatacaatgtagatttctgt 31
||||||||||| |||||||||||||||||
Sbjct: 3 tgaacctggcacacaatgtagatttctgt 31
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 acagctacattgtctgctgggtttc 69
|||||||||||||||||||||||||
Sbjct: 44 acagctacattgtctgctgggtttc 68
