miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;ABJB010367147.1/2213-2272 6945:Ixodes scapularis
          (black-legged tick)
          Length = 60

 Score =  119 bits (60), Expect = 7e-27
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                      
Query: 23 ttctttggttatctagctgtatgagtgatattaacatcataaagctaggttaccaaagtt 82
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttctttggttatctagctgtatgagtgatattaacatcataaagctaggttaccaaagtt 60




>RF00237;mir-9;AAST01027169.1/135-76 7240:Drosophila simulans
          Length = 60

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                       
Query: 26 tttggttatctagctgtatgagtgatattaacatcataaagctag 70
          ||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 4  tttggttatctagctgtatgagtgataataacgtcataaagctag 48




>RF00237;mir-9;AAPU01011594.1/225879-225819 7230:Drosophila
          mojavensis
          Length = 61

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 55/60 (91%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                      
Query: 24 tctttggttatctagctgtatgagtgat-attaacatcataaagctaggttaccaaagtt 82
          |||||||||||||||||||||||||||| | |||| |||||||||||| ||||| |||||
Sbjct: 2  tctttggttatctagctgtatgagtgataaataacgtcataaagctagcttaccgaagtt 61




>RF00237;mir-9;ABIR01000787.1/71736-71795 6334:Trichinella
          spiralis
          Length = 60

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                    
Query: 23 ttctttggttatctagctgtatgagtgatattaacatcataaagctaggttaccaaag 80
          |||||||||||||||||||||||||||   | | | ||||||||||||||||||||||
Sbjct: 1  ttctttggttatctagctgtatgagtgtactgagcgtcataaagctaggttaccaaag 58




>RF00237;mir-9;AAJJ01000398.1/19121-19058 7070:Tribolium castaneum
          (red flour beetle)
          Length = 64

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 51/58 (87%), Gaps = 4/58 (6%)
 Strand = Plus / Plus

                                                                    
Query: 23 ttctttggttatctagctgtatgagt----gatattaacatcataaagctaggttacc 76
          ||||||||||||||||||||||||||      || |||||||||||||||||||||||
Sbjct: 1  ttctttggttatctagctgtatgagtattgtttaataacatcataaagctaggttacc 58




>RF00237;mir-9;AAQA01000025.1/15457-15396 6279:Brugia malayi
          Length = 62

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 51/58 (87%), Gaps = 2/58 (3%)
 Strand = Plus / Plus

                                                                    
Query: 25 ctttggttatctagctgtatgagt--gatattaacatcataaagctaggttaccaaag 80
          ||||||||||||||||||||||||  | || |  | ||||||||||||||||||||||
Sbjct: 3  ctttggttatctagctgtatgagtaagttactggcttcataaagctaggttaccaaag 60




>RF00237;mir-9;AAPN01432088.1/257-198 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 60

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 24 tctttggttatctagctgtatgagtg 49
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;ABVD01485145.1/30-90 9358:Choloepus hoffmanni
          (Hoffmann's two-fingered sloth)
          Length = 61

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 24 tctttggttatctagctgtatgagtg 49
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;AAGV020387958.1/714-775 9361:Dasypus novemcinctus
          (nine-banded armadillo)
          Length = 62

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 24 tctttggttatctagctgtatgagtg 49
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;ABRQ01039829.1/2882-2943 9813:Procavia capensis
          (cape rock hyrax)
          Length = 62

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 24 tctttggttatctagctgtatgagtg 49
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;BAAF04134102.1/794-855 8090:Oryzias latipes
          (Japanese medaka)
          Length = 62

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 24 tctttggttatctagctgtatgagtg 49
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;BAAF04020747.1/88-147 8090:Oryzias latipes
          (Japanese medaka)
          Length = 60

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 24 tctttggttatctagctgtatgagtg 49
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;BAAE01106217.1/407-468 8090:Oryzias latipes
          (Japanese medaka)
          Length = 62

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 24 tctttggttatctagctgtatgagtg 49
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;ABLF01047176.1/4611-4545 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 67

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 24 tctttggttatctagctgtatgagtg 49
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;AAAB01008960.1/1144939-1144878 180454:Anopheles
          gambiae str. PEST
          Length = 62

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 24 tctttggttatctagctgtatgagtg 49
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;CAAK05014843.1/1888-1946 7955:Danio rerio
          (zebrafish)
          Length = 59

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 24 tctttggttatctagctgtatgagt 48
          |||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagt 26




>RF00237;mir-9;BAAF04047241.1/1745-1804 8090:Oryzias latipes
          (Japanese medaka)
          Length = 60

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 24 tctttggttatctagctgtatgagt 48
          |||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagt 26




>RF00237;mir-9;AAVX01065791.1/2124-2183 7868:Callorhinchus milii
          (ghost shark)
          Length = 60

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 24 tctttggttatctagctgtatgagt 48
          |||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagt 26




>RF00237;mir-9;ABEP02027847.1/93613-93673 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 61

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 24 tctttggttatctagctgtatgag 47
          ||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgag 25




>RF00237;mir-9;ABKE01012786.1/839-779 54126:Pristionchus pacificus
          Length = 61

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 24 tctttggttatctagctgtatga 46
          |||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatga 24




>RF00237;mir-9;AAZO01004437.1/24877-24818 121224:Pediculus humanus
          corporis (human body louse)
          Length = 60

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 23 ttctttggttatctagctgtatg 45
          |||||||||||||||||||||||
Sbjct: 1  ttctttggttatctagctgtatg 23




>RF00237;mir-9;AAGD02008921.1/11473-11541 31234:Caenorhabditis
          remanei
          Length = 69

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 tcataaagctaggttaccaaag 80
          ||||||||||||||||||||||
Sbjct: 46 tcataaagctaggttaccaaag 67




>RF00237;mir-9;Z81467.1/13319-13384 6239:Caenorhabditis elegans
          Length = 66

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 tcataaagctaggttaccaaag 80
          ||||||||||||||||||||||
Sbjct: 43 tcataaagctaggttaccaaag 64




>RF00237;mir-9;ABLE02000370.1/4844-4906 281687:Caenorhabditis
          japonica
          Length = 63

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 tcataaagctaggttaccaaag 80
          ||||||||||||||||||||||
Sbjct: 40 tcataaagctaggttaccaaag 61




>RF00237;mir-9;CAAC02000589.1/144634-144698 6238:Caenorhabditis
          briggsae
          Length = 65

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 tcataaagctaggttaccaaag 80
          ||||||||||||||||||||||
Sbjct: 42 tcataaagctaggttaccaaag 63




>RF00237;mir-9;ABEG01008189.1/7393-7325 135651:Caenorhabditis
          brenneri
          Length = 69

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 tcataaagctaggttaccaaag 80
          ||||||||||||||||||||||
Sbjct: 46 tcataaagctaggttaccaaag 67




>RF00237;mir-9;ABKE01001679.1/8647-8709 54126:Pristionchus
          pacificus
          Length = 63

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 tcataaagctaggttaccaaag 80
          ||||||||||||||||||||||
Sbjct: 40 tcataaagctaggttaccaaag 61




>RF00237;mir-9;AAVX01083387.1/420-360 7868:Callorhinchus milii
          (ghost shark)
          Length = 61

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 24 tctttggttatctagctgtatgagtg 49
          ||||||||| ||||||||||||||||
Sbjct: 2  tctttggttttctagctgtatgagtg 27