miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00725;mir-iab-4;AAJJ01001135.1/10616-10533 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 87.7 bits (44), Expect = 2e-17
Identities = 69/76 (90%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 10 aaccccctggacgtatactgaatgtatcctgagcttcattcattccggtataccttcagt 69
||||||||| ||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct: 5 aaccccctgtacgtatactgaatgtatcctgagtgtt-ttctgtccggtataccttcagt 63
Query: 70 atacgtaacaggaggc 85
||||||||||||||||
Sbjct: 64 atacgtaacaggaggc 79
>RF00725;mir-iab-4;AAPU01010953.1/219687-219770 7230:Drosophila
mojavensis
Length = 84
Score = 69.9 bits (35), Expect = 6e-12
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 20 acgtatactgaatgtatcctgagcttcattcattccggtataccttcagtatacgtaaca 79
||||||||||||||||||||||| | || | |||||||||||||||||||||||||||
Sbjct: 15 acgtatactgaatgtatcctgagtgt-atcctatccggtataccttcagtatacgtaaca 73
Query: 80 ggaggcaacac 90
|||| |||||
Sbjct: 74 cgaggaaacac 84
>RF00725;mir-iab-4;ABKP02025153.1/22654-22737 377271:Anopheles
gambiae M
Length = 84
Score = 61.9 bits (31), Expect = 1e-09
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 20 acgtatactgaatgtatcctgagcttcattcattccggtataccttcagtatacgtaaca 79
||||||||||||||||||||||| | | || ||||||||||||||||||||||||||
Sbjct: 15 acgtatactgaatgtatcctgagtgctacttat-ccggtataccttcagtatacgtaaca 73
Query: 80 ggaggcaacac 90
||||| ||||
Sbjct: 74 agaggcgacac 84
>RF00725;mir-iab-4;ABLF01001794.1/37283-37372 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 53 tccggtataccttcagtatacgtaacagg 81
|||||||||||||||||||||||||||||
Sbjct: 53 tccggtataccttcagtatacgtaacagg 81
>RF00725;mir-iab-4;AADK01004318.1/3463-3550 7091:Bombyx mori
(domestic silkworm)
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 20 acgtatactgaatgtatcctgag--cttcattcat-tccggtataccttcagtatacgta 76
||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||
Sbjct: 15 acgtatactgaatgtatcctgagtgcgcgattcttgtccggtataccttcagtatacgta 74
Query: 77 acag 80
||||
Sbjct: 75 acag 78
>RF00725;mir-iab-4;ABJB010512107.1/48251-48167 6945:Ixodes
scapularis (black-legged tick)
Length = 85
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 52 ttccggtataccttcagtatacgtaac 78
|||||||||||||||||||||||||||
Sbjct: 47 ttccggtataccttcagtatacgtaac 73
