miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00706;mir-263;ABLF01028761.1/10726-10634 7029:Acyrthosiphon
          pisum (pea aphid)
          Length = 93

 Score =  131 bits (66), Expect = 1e-30
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  aatggcactgaaagaattcacggggtacatatttacacatcacccgtagttcttctgtgc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 aatggcactgaaagaattcacggggtacatatttacacatcacccgtagttcttctgtgc 75

                
Query: 61 cgtatt 66
          ||||||
Sbjct: 76 cgtatt 81




>RF00706;mir-263;AAZO01000403.1/2645-2725 121224:Pediculus humanus
          corporis (human body louse)
          Length = 81

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  aatggcactgaaagaattcacgg 23
          |||||||||||||||||||||||
Sbjct: 13 aatggcactgaaagaattcacgg 35




>RF00706;mir-263;AC011065.6/94391-94302 7227:Drosophila
          melanogaster (fruit fly)
          Length = 90

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 1  aatggcactgaaagaattcacggggta 27
          |||||||||| ||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggggta 42




>RF00706;mir-263;AADE01000074.1/40884-40796 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 89

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  aatggcactgaaagaattcacggggt 26
          |||||||||| |||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggggt 41




>RF00706;mir-263;AAPU01010625.1/4665-4753 7230:Drosophila
          mojavensis
          Length = 89

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  aatggcactgaaagaattcacggggt 26
          |||||||||| |||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggggt 41




>RF00706;mir-263;AAJJ01000157.1/103377-103289 7070:Tribolium
          castaneum (red flour beetle)
          Length = 89

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  aatggcactgaaagaattcacggggt 26
          |||||||||| |||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggggt 41




>RF00706;mir-263;ABJB010285488.1/4151-4241 6945:Ixodes scapularis
          (black-legged tick)
          Length = 91

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  aatggcactgaaagaattcacggggt 26
          |||||||||| |||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggggt 41




>RF00706;mir-263;AAZX01007729.1/30973-30881 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 93

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aatggcactgaaagaattcacgggg 25
          |||||||||| ||||||||||||||
Sbjct: 17 aatggcactggaagaattcacgggg 41




>RF00706;mir-263;AADG05003940.1/44836-44746 7460:Apis mellifera
          (honey bee)
          Length = 91

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  aatggcactgaaagaattcacgggg 25
          |||||||||| ||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggg 40