miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00754;mir-279;ABLF01005773.1/5502-5409 7029:Acyrthosiphon pisum
(pea aphid)
Length = 94
Score = 127 bits (64), Expect = 2e-29
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 1 atgggtgtgtgtctagtgacatgcgttttatatttgacagacatgactagatccacactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 atgggtgtgtgtctagtgacatgcgttttatatttgacagacatgactagatccacactc 77
Query: 61 atcc 64
||||
Sbjct: 78 atcc 81
>RF00754;mir-279;BABH01023670.1/7511-7596 7091:Bombyx mori
(domestic silkworm)
Length = 86
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 catgactagatccacactcatcc 64
|||||||||||||||||||||||
Sbjct: 51 catgactagatccacactcatcc 73
>RF00754;mir-279;AAJJ01000939.1/8868-8954 7070:Tribolium castaneum
(red flour beetle)
Length = 87
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 catgactagatccacactcatcc 64
|||||||||||||||||||||||
Sbjct: 52 catgactagatccacactcatcc 74
>RF00754;mir-279;ABJB010738028.1/1547-1632 6945:Ixodes scapularis
(black-legged tick)
Length = 86
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 catgactagatccacactcatcc 64
|||||||||||||||||||||||
Sbjct: 51 catgactagatccacactcatcc 73
>RF00948;mir-996;AADG05007607.1/6578-6670 7460:Apis mellifera
(honey bee)
Length = 93
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 tgactagatccacactcatcc 64
|||||||||||||||||||||
Sbjct: 58 tgactagatccacactcatcc 78
>RF00754;mir-279;AADG05007607.1/6579-6668 7460:Apis mellifera
(honey bee)
Length = 90
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 tgactagatccacactcatcc 64
|||||||||||||||||||||
Sbjct: 57 tgactagatccacactcatcc 77
