miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00967;mir-281;AAJJ01001668.1/5737-5811 7070:Tribolium castaneum
(red flour beetle)
Length = 75
Score = 65.9 bits (33), Expect = 5e-11
Identities = 55/62 (88%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 1 aagagagctatccgtcgacagtataatttttaactacactgtcatggagttgctctcttt 60
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 11 aagagagctatccgtcgacagtatataattta----cactgtcatggagttgctctcttt 66
Query: 61 at 62
||
Sbjct: 67 at 68
>RF00967;mir-281;ABEP02022249.1/34089-34173 7739:Branchiostoma
floridae (Florida lancelet)
Length = 85
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 36 acactgtcatggagttgctctcttt 60
|||||||||||||||||||||||||
Sbjct: 49 acactgtcatggagttgctctcttt 73
>RF00967;mir-281;AABS01000211.1/21157-21238 7719:Ciona
intestinalis
Length = 82
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 actgtcatggagttgctctctt 59
||||||||||||||||||||||
Sbjct: 46 actgtcatggagttgctctctt 67
>RF00249;mir-46;ABLG01000135.1/98827-98917 6305:Meloidogyne hapla
Length = 91
Score = 42.1 bits (21), Expect = 7e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 ctgtcatggagttgctctctt 59
|||||||||||||||||||||
Sbjct: 64 ctgtcatggagttgctctctt 84
