miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00717;mir-315;ABLF01028780.1/3045-2960 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 86

 Score =  129 bits (65), Expect = 4e-30
 Identities = 65/65 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttttgattgttgctcagaaagcctttcatatattgtacggtggctttctagcaataatca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcctttcatatattgtacggtggctttctagcaataatca 71

               
Query: 61 tgacc 65
          |||||
Sbjct: 72 tgacc 76




>RF00717;mir-315;AAPT01020729.1/201657-201576 7222:Drosophila
          grimshawi
          Length = 82

 Score = 56.0 bits (28), Expect = 5e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 1  ttttgattgttgctcagaaagcctttca 28
          ||||||||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcctttca 39




>RF00717;mir-315;AADG05000960.1/7218-7138 7460:Apis mellifera
          (honey bee)
          Length = 81

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  ttttgattgttgctcagaaagcctt 25
          |||||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcctt 36




>RF00717;mir-315;AAZX01000470.1/15987-15906 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  ttttgattgttgctcagaaagcct 24
          ||||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcct 35




>RF00717;mir-315;AAGE02021501.1/12488-12571 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 84

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttttgattgttgctcagaaagcc 23
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>RF00717;mir-315;AAAB01006400.1/15231-15314 180454:Anopheles
          gambiae str. PEST
          Length = 84

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttttgattgttgctcagaaagcc 23
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>RF00717;mir-315;AASU01006755.1/588-667 7240:Drosophila simulans
          Length = 80

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttttgattgttgctcagaaagcc 23
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>RF00717;mir-315;AAFS01000172.1/91075-90992 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 84

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttttgattgttgctcagaaagcc 23
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>RF00717;mir-315;AAPQ01006582.1/536778-536860 7220:Drosophila
          erecta
          Length = 83

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttttgattgttgctcagaaagcc 23
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>RF00717;mir-315;AAPU01011669.1/1431-1347 7230:Drosophila
          mojavensis
          Length = 85

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttttgattgttgctcagaaagcc 23
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>RF00717;mir-315;AANI01017430.1/85121-85040 7244:Drosophila
          virilis
          Length = 82

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttttgattgttgctcagaaagcc 23
          |||||||||||||||||||||||
Sbjct: 12 ttttgattgttgctcagaaagcc 34




>RF00717;mir-315;AAJJ01004236.1/2476-2553 7070:Tribolium castaneum
          (red flour beetle)
          Length = 78

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttttgattgttgctcagaaagcc 23
          |||||||||||||||||||||||
Sbjct: 11 ttttgattgttgctcagaaagcc 33