miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
M
Length = 79
Score = 157 bits (79), Expect = 3e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 12 gcgaaagttccatgcttccttgcattcaatagtatgtttgtaaaaccctatggaatgtaa 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgaaagttccatgcttccttgcattcaatagtatgtttgtaaaaccctatggaatgtaa 60
Query: 72 agaagtatggagcgattgg 90
|||||||||||||||||||
Sbjct: 61 agaagtatggagcgattgg 79
>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
S
Length = 79
Score = 141 bits (71), Expect = 2e-33
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 12 gcgaaagttccatgcttccttgcattcaatagtatgtttgtaaaaccctatggaatgtaa 71
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gcgaaagttccatgcttccttgcattcaatagtatgtttcaaaaaccctatggaatgtaa 60
Query: 72 agaagtatggagcgattgg 90
|||||||||||||||||||
Sbjct: 61 agaagtatggagcgattgg 79
>RF00103;mir-1;AAPU01010689.1/17805-17881 7230:Drosophila
mojavensis
Length = 77
Score = 85.7 bits (43), Expect = 1e-16
Identities = 64/70 (91%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 17 agttccatgcttccttgcattcaatagtatgtttgtaaaaccctatggaatgtaaagaag 76
||||||||||||||||||||||||||||| ||| || || | |||||||||||||||||
Sbjct: 6 agttccatgcttccttgcattcaatagta--tttatataagcatatggaatgtaaagaag 63
Query: 77 tatggagcga 86
||||||||||
Sbjct: 64 tatggagcga 73
>RF00103;mir-1;AAGE02025061.1/66260-66336 7159:Aedes aegypti
(yellow fever mosquito)
Length = 77
Score = 83.8 bits (42), Expect = 4e-16
Identities = 66/73 (90%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 13 cgaaagttccatgcttccttgcattcaatagtatgtttgtaaaaccctatggaatgtaaa 72
|||||||||||||||||||||||||||||||| | || | ||| | |||||||||||||
Sbjct: 2 cgaaagttccatgcttccttgcattcaatagt--gattctgaaagcatatggaatgtaaa 59
Query: 73 gaagtatggagcg 85
|||||||||||||
Sbjct: 60 gaagtatggagcg 72
>RF00103;mir-1;AAPT01020974.1/21428-21504 7222:Drosophila
grimshawi
Length = 77
Score = 69.9 bits (35), Expect = 6e-12
Identities = 62/70 (88%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 17 agttccatgcttccttgcattcaatagtatgtttgtaaaaccctatggaatgtaaagaag 76
||||||||||||||||||||||||||||| | | | || | |||||||||||||||||
Sbjct: 6 agttccatgcttccttgcattcaatagta--tataaataagcatatggaatgtaaagaag 63
Query: 77 tatggagcga 86
||||||||||
Sbjct: 64 tatggagcga 73
>RF00103;mir-1;AAJJ01000046.1/50771-50844 7070:Tribolium castaneum
(red flour beetle)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatggagcga 86
|||||||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatggagcga 70
>RF00103;mir-1;ABLF01045264.1/8417-8511 7029:Acyrthosiphon pisum
(pea aphid)
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatggagcg 85
||||||||||||||||||||||||||
Sbjct: 68 tatggaatgtaaagaagtatggagcg 93
>RF00103;mir-1;AAZO01007144.1/49277-49350 121224:Pediculus humanus
corporis (human body louse)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatggagc 84
|||||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatggagc 68
>RF00103;mir-1;BAAB01105211.1/2094-2168 7091:Bombyx mori (domestic
silkworm)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatggagc 84
|||||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatggagc 69
>RF00103;mir-1;AAZX01000650.1/30055-30128 7425:Nasonia vitripennis
(jewel wasp)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatggagc 84
|||||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatggagc 68
>RF00103;mir-1;AADG05005577.1/859-932 7460:Apis mellifera (honey
bee)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatggagc 84
|||||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatggagc 68
>RF00103;mir-1;ABJB010316955.1/9942-10021 6945:Ixodes scapularis
(black-legged tick)
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 tatggaatgtaaagaagtatggag 83
||||||||||||||||||||||||
Sbjct: 50 tatggaatgtaaagaagtatggag 73
>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
purpuratus
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 49 ctatggaatgtaaagaagtatg 70
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 45 ctatggaatgtaaagaagtatg 66
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 46 ctatggaatgtaaagaagtatg 67
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 46 ctatggaatgtaaagaagtatg 67
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 46 ctatggaatgtaaagaagtatg 67
>RF00103;mir-1;AAYZ01364871.1/459-535 9978:Ochotona princeps
(American pika)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 46 ctatggaatgtaaagaagtatg 67
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 45 ctatggaatgtaaagaagtatg 66
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 46 ctatggaatgtaaagaagtatg 67
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 46 ctatggaatgtaaagaagtatg 67
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 46 ctatggaatgtaaagaagtatg 67
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 47 ctatggaatgtaaagaagtatg 68
>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 46 ctatggaatgtaaagaagtatg 67
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 47 ctatggaatgtaaagaagtatg 68
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 45 ctatggaatgtaaagaagtatg 66
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ctatggaatgtaaagaagtatg 80
||||||||||||||||||||||
Sbjct: 45 ctatggaatgtaaagaagtatg 66
